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26 publications found

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TitleAuthors (identified)Published InIdentifier(s)TopicPublished DateMatch?
Correction to: Genome-enabled insights into the biology of thrips as crop pests[1]Dorith Rotenberg, [2]Aaron A Baumann, [3]Sulley Ben-Mahmoud, [4]Olivier Christiaens, [5]Wannes Dermauw, [6]Panagiotis Ioannidis, [7]Chris G C Jacobs, [8]Iris M Vargas Jentzsch, [9]Jonathan E Oliver, [10]Monica F Poelchau, ..., [15]Dong Wei, [16]Shirani M K Widana Gamage, [17]Daniel S T Hughes, [18]Shwetha C Murali, [19]Samuel T Bailey, ... [Full author list]BMC Biology [missing]DOI: 10.1186/S12915-020-00915-Z [ORCID]
PubMed: 33198778 [ORCID]
2020-11-16
Genome-enabled insights into the biology of thrips as crop pests[1]Dorith Rotenberg, [2]Aaron A Baumann, [3]Sulley Ben-Mahmoud, [4]Olivier Christiaens, [5]Wannes Dermauw, [6]Panagiotis Ioannidis, [7]Chris G C Jacobs, [8]Iris M Vargas Jentzsch, [9]Jonathan E Oliver, [10]Monica F Poelchau, ..., [15]Dong Wei, [16]Shirani M K Widana Gamage, [17]Daniel S T Hughes, [18]Shwetha C Murali, [19]Samuel T Bailey, ... [Full author list]BMC Biology [missing]DOI: 10.1186/S12915-020-00862-9 [ORCID]
PubMed: 33070780 [ORCID]
2020-10-19
Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera[1]Jan Philip Oeyen, [2]Patrice Baa-Puyoulet, [3]Joshua B. Benoit, [4]Leo W Beukeboom, [5]Erich Bornberg-Bauer, [6]Anja Buttstedt, [7]Federica Calevro, [8]Elizabeth I Cash, [9]Hsu Chao, [10]Hubert Charles, ..., [31]Bill S Hansson, [32]Frank Hauser, [33]Daniel S T Hughes, [34]Panagiotis Ioannidis, [35]Emmanuelle Jacquin-Joly, ... [Full author list]Genome Biology and Evolution [missing]DOI: 10.1093/GBE/EVAA106 [ORCID]
PubMed: 32442304 [ORCID]
Hymenoptera [missing]; eusociality [missing]2020-05-22
Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest[1]Michael E Sparks, [2]Raman Bansal, [3]Joshua B. Benoit, [4]Michael B Blackburn, [5]Hsu Chao, [6]Mengyao Chen, [7]Sammy Cheng, [8]Christopher Childers, [9]Huyen Dinh, [10]Harsha Vardhan Doddapaneni, ..., [18]Richard W Hardy, [19]Christopher J Holmes, [20]Daniel S T Hughes, [21]Panagiotis Ioannidis, [22]Alys M Cheatle Jarvela, ... [Full author list]BMC Genomics [missing]DOI: 10.1186/S12864-020-6510-7 [ORCID]
PubMed: 32171258 [ORCID]
insecticide [missing]; brown marmorated stink bug [missing]; insecticide resistance [missing]2020-03-14
Gene content evolution in the arthropods[1]Gregg W C Thomas, [2]Elias Dohmen, [3]Daniel S T Hughes, [4]Shwetha C Murali, [5]Monica F Poelchau, [6]Karl Glastad, [7]Clare A Anstead, [8]Nadia A Ayoub, [9]Philip Batterham, [10]Michelle Bellair, ... [Full author list]Genome Biology [missing]DOI: 10.1186/S13059-019-1925-7 [ORCID]
PubMed: 31969194 [ORCID]
2020-01-23
Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome[1]Kristen A Panfilio, [2]Iris M Vargas Jentzsch, [3]Joshua B. Benoit, [4]Deniz F. Erezyilmaz, [5]Y. Suzuki, [6]Stefano Colella, [7]Hugh M Robertson, [8]Monica F Poelchau, [9]Robert M. Waterhouse, [10]Panagiotis Ioannidis, [11]Matthew T Weirauch, [12]Daniel S T Hughes, [13]Shwetha C Murali, [14]John Werren, ... [Full author list]Genome Biology [missing]DOI: 10.1186/S13059-019-1660-0 [ORCID]
PubMed: 30935422 [ORCID]
Hemiptera [missing]; RNAI [missing]; gene structure [missing]; Lateral Gene Transfer [missing]; Transcription Factors [missing]2019-04-02
The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water[1]David Armisén, [2]Rajendhran Rajakumar, [3]Markus Friedrich, [4]Joshua B. Benoit, [5]Hugh M Robertson, [6]Kristen A Panfilio, [7]Seung-Joon Ahn, [8]Monica F Poelchau, [9]Hsu Chao, [10]Huyen Dinh, ..., [12]Shannon Dugan, [13]Richard A Gibbs, [14]Daniel S T Hughes, [15]Yi Han, [16]Sandra L Lee, ... [Full author list]BMC Genomics [missing]DOI: 10.1186/S12864-018-5163-2 [ORCID]
PubMed: 30463532 [ORCID]
biotechnology [missing]; Gerris buenoi [missing]2018-11-21
Reproductive Longevity Predicts Mutation Rates in Primates[1]Gregg W C Thomas, [2]Richard J Wang, [3]Arthi Puri, [4]Ronald Harris, [5]Muthuswamy Raveendran, [6]Daniel S T Hughes, [7]Shwetha C Murali, [8]Lawrence E Williams, [9]Harsha Doddapaneni, [10]Donna Muzny, [11]Richard A Gibbs, [12]Christian R Abee, [13]Mary R Galinski, [14]Kim C Worley, [15]Jeffrey Rogers, [16]Predrag Radivojac, [17]Matthew W Hahn [Full author list]Current Biology [missing]DOI: 10.1016/J.CUB.2018.08.050 [ORCID]
PubMed: 30270182 [ORCID]
2018-09-27
Comparative genomics of the miniature wasp and pest control agent Trichogramma pretiosum[1]Amelia R.I. Lindsey, [2]Yogeshwar D Kelkar, [3]Xin Wu, [4]Dan Sun, [5]Ellen O Martinson, [6]Zhichao Yan, [7]Paul F. Rugman-Jones, [8]Daniel S T Hughes, [9]Shwetha C Murali, [10]Jiaxin Qu, ... [Full author list]BMC Biology [missing]DOI: 10.1186/S12915-018-0520-9 [ORCID]
PubMed: 29776407 [ORCID]
comparative genomics [missing]; pest control [missing]; Trichogramma pretiosum [missing]2018-05-18
The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology.[1]Helen C Poynton, [2]Simone Hasenbein, [3]Joshua B. Benoit, [4]Maria S Sepúlveda, [5]Monica F Poelchau, [6]Daniel S T Hughes, [7]Shwetha C Murali, [8]Shuai Chen, [9]Karl Glastad, [10]Michael A D Goodisman, ... [Full author list]Environmental Science & Technology [missing]DOI: 10.1021/ACS.EST.8B00837 [ORCID]
PubMed: 29634279 [ORCID]
Hyalella azteca [missing]; ecotoxicology [missing]2018-04-10
Hemimetabolous genomes reveal molecular basis of termite eusociality[1]Mark C Harrison, [2]Evelien Jongepier, [3]Hugh M Robertson, [4]Nicolas Arning, [5]Tristan Bitard-Feildel, [6]Hsu Chao, [7]Christopher P. Childers, [8]Huyen Dinh, [9]Harshavardhan Doddapaneni, [10]Shannon Dugan, ..., [13]Yi Han, [14]Haofu Hu, [15]Daniel S T Hughes, [16]Ann Kathrin Huylmans, [17]Carsten Kemena, ... [Full author list]Nature Ecology and Evolution [missing]DOI: 10.1038/S41559-017-0459-1 [ORCID]
PubMed: 29403074 [ORCID]
eusociality [missing]2018-02-05
Evolutionary History of Chemosensory-Related Gene Families across the Arthropoda[1]Seong-Il Eyun, [2]Ho Young Soh, [3]Marijan Posavi, [4]James B. Munro, [5]Daniel S T Hughes, [6]Shwetha C Murali, [7]Jiaxin Qu, [8]Shannon Dugan, [9]Sandra L Lee, [10]Hsu Chao, [11]Huyen Dinh, [12]Yi Han, [13]HarshaVardhan Doddapaneni, [14]Kim C Worley, [15]Donna Muzny, [16]Eun-Ok Park, [17]Joana C Silva, [18]Richard A Gibbs, [19]Stephen Richards, [20]Carol Eunmi Lee [Full author list]Molecular Biology and Evolution [missing]DOI: 10.1093/MOLBEV/MSX147 [ORCID]
PubMed: 28460028 [ORCID]
Arthropoda [missing]; chemoreceptor cell [missing]; chemosensation [missing]2017-08-01
The house spider genome reveals an ancient whole-genome duplication during arachnid evolution.[1]Evelyn E Schwager, [2]Prashant P Sharma, [3]Thomas Clarke, [4]Daniel J Leite, [5]Torsten Wierschin, [6]Matthias Pechmann, [7]Yasuko Akiyama-Oda, [8]Lauren Esposito, [9]Jesper Bechsgaard, [10]Trine Bilde, ..., [24]Cheryl Y. Hayashi, [25]Maarten Hilbrant, [26]Daniel S T Hughes, [27]Ralf Janssen, [28]Sandra L Lee, ... [Full author list]BMC Biology [missing]DOI: 10.1186/S12915-017-0399-X [ORCID]
PubMed: 28756775 [ORCID]
whole genome duplication [missing]2017-07-31
The house spider genome reveals an ancient whole-genome duplication during arachnid evolution[1]Evelyn E Schwager, [2]Prashant P Sharma, [3]Thomas Clarke, [4]Daniel J Leite, [5]Torsten Wierschin, [6]Matthias Pechmann, [7]Yasuko Akiyama-Oda, [8]Lauren Esposito, [9]Jesper Bechsgaard, [10]Trine Bilde, ..., [24]Cheryl Y. Hayashi, [25]Maarten Hilbrant, [26]Daniel S T Hughes, [27]Ralf Janssen, [28]Sandra L Lee, ... [Full author list]DOI: 10.1101/106385 [ORCID]
whole genome duplication [missing]2017-02-08
Erratum to: The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species[1]Alexie Papanicolaou, [2]Marc F Schetelig, [3]Peter Arensburger, [4]Peter W Atkinson, [5]Joshua B. Benoit, [6]Kostas Bourtzis, [7]Pedro Castañera, [8]John P Cavanaugh, [9]Hsu Chao, [10]Christopher P. Childers, ..., [26]Artemis G Hatzigeorgiou, [27]Pedro Hernández-Crespo, [28]Daniel S T Hughes, [29]Jeffery W Jones, [30]Dimitra Karagkouni, ... [Full author list]Genome Biology [missing]DOI: 10.1186/S13059-017-1155-9 [ORCID]
PubMed: 28100280 [ORCID]
invasive species [missing]; Ceratitis capitata [missing]; The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species [missing]; invasion biology [missing]; adaptive evolution [missing]; invasive pest [missing]; invasive pest species [missing]2017-01-18
Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface[1]Duane D McKenna, [2]Erin D. Scully, [3]Yannick Pauchet, [4]Kelli Hoover, [5]Roy Kirsch, [6]Scott M Geib, [7]Robert F Mitchell, [8]Robert M. Waterhouse, [9]Seung-Joon Ahn, [10]Deanna Arsala, ..., [31]Stephanie Haddad, [32]Yi Han, [33]Daniel S T Hughes, [34]Panagiotis Ioannidis, [35]J Spencer Johnston, ... [Full author list]Genome Biology [missing]DOI: 10.1186/S13059-016-1088-8 [ORCID]
PubMed: 27832824 [ORCID]
invasive species [missing]; Asian long-horned beetle [missing]; evolutionary novelty [missing]; invasion biology [missing]; evolution of biotic invasiveness [missing]2016-11-11
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species[1]Alexie Papanicolaou, [2]Marc F Schetelig, [3]Peter Arensburger, [4]Peter W Atkinson, [5]Joshua B. Benoit, [6]Kostas Bourtzis, [7]Pedro Castañera, [8]John P Cavanaugh, [9]Hsu Chao, [10]Christopher P. Childers, ..., [26]Artemis G Hatzigeorgiou, [27]Pedro Hernandez-Crespo, [28]Daniel S T Hughes, [29]Jeffery W Jones, [30]Dimitra Karagkouni, ... [Full author list]Genome Biology [missing]DOI: 10.1186/S13059-016-1049-2 [ORCID]
PubMed: 27659211 [ORCID]
invasive species [missing]; Ceratitis capitata [missing]; invasion biology [missing]; adaptive evolution [missing]; invasive pest [missing]; invasive pest species [missing]; evolution of biotic invasiveness [missing]2016-09-22
Unique features of a global human ectoparasite identified through sequencing of the bed bug genome[1]Joshua B. Benoit, [2]Zach Adelman, [3]Klaus Reinhardt, [4]Amanda Dolan, [5]Monica F Poelchau, [6]Emily C Jennings, [7]Elise M Szuter, [8]Richard W Hagan, [9]Hemant Gujar, [10]Jayendra Nath Shukla, ..., [46]Chien-Yueh Lee, [47]Han Lin, [48]Daniel S T Hughes, [49]Elizabeth J. Duncan, [50]Shwetha C Murali, ... [Full author list]Nature Communications [missing]DOI: 10.1038/NCOMMS10165 [ORCID]
PubMed: 26836814 [ORCID]
ectoparasite [missing]2016-02-02
Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection[1]Rafael Dias Mesquita, ..., [2]Raquel J Vionette-Amaral, [3]Carl Lowenberger, [4]Rolando Rivera-Pomar, [5]Fernando A Monteiro, [6]Patrick Minx, [7]John Spieth, [8]Antonio Bernardo Carvalho, [9]Francisco Panzera, [10]Daniel Lawson, ..., [53]Roderic Guigó i Serra, [54]Myriam Harry, [55]Daniel S T Hughes, [56]Willy Jablonka, [57]Emmanuelle Jacquin-Joly, ... [Full author list]Proceedings of the National Academy of Sciences of the United States of America [missing]DOI: 10.1073/PNAS.1506226112 [ORCID]
PubMed: 26627243 [ORCID]
insect [missing]; Chagas disease [missing]; vector-borne disease [missing]; Rhodnius prolixus [missing]2015-11-16
Lucilia cuprina genome unlocks parasitic fly biology to underpin future interventions[1]Clare A Anstead, [2]Pasi K. Korhonen, [3]Neil D. Young, [4]Ross S Hall, [5]Aaron R Jex, [6]Shwetha C Murali, [7]Daniel S T Hughes, [8]Siu F Lee, [9]Trent Perry, [10]Andreas J. Stroehlein, ... [Full author list]Nature Communications [missing]DOI: 10.1038/NCOMMS8344 [ORCID]
PubMed: 26108605 [ORCID]
Lucilia cuprina [missing]2015-06-25
Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes[1]Daniel Neafsey, [2]Robert M. Waterhouse, [3]Mohammad R Abai, [4]Sergey S Aganezov, [5]Max A. Alekseyev, [6]James E Allen, [7]James Amon, [8]Bruno Arcà, [9]Peter Arensburger, [10]Gleb Artemov, ..., [31]Mira V Han, [32]Thaung Hlaing, [33]Daniel S T Hughes, [34]Adam M Jenkins, [35]Xiaofang Jiang, ... [Full author list]Science [missing]DOI: 10.1126/SCIENCE.1258522 [ORCID]
PubMed: 25554792 [ORCID]
malaria [missing]2014-11-27
The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima[1]Ariel D. Chipman, [2]David E K Ferrier, [3]Carlo Brena, [4]Jiaxin Qu, [5]Daniel S T Hughes, [6]Reinhard Schröder, [7]Montserrat Torres-Oliva, [8]Nadia Znassi, [9]Huaiyang Jiang, [10]Francisca C Almeida, ... [Full author list]PLOS Biology [missing]DOI: 10.1371/JOURNAL.PBIO.1002005 [ORCID]
PubMed: 25423365 [ORCID]
genome [missing]; Strigamia maritima [missing]2014-11-01
VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics.[1]Karine Megy, [2]Scott J Emrich, [3]Daniel Lawson, [4]David Campbell, [5]Emmanuel Dialynas, [6]Daniel S T Hughes, [7]Gautier Koscielny, [8]Christos Louis, [9]Robert Maccallum, [10]Seth N Redmond, [11]Andrew Sheehan, [12]Pantelis Topalis, [13]Derek Wilson, [14]VectorBase Consortium [Full author list]Nucleic Acids Research [missing]DOI: 10.1093/NAR/GKR1089 [ORCID]
PubMed: 22135296 [ORCID]
bioinformatics [missing]2011-12-01
Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species[1]Paul J. Kersey, [2]Daniel M Staines, [3]Daniel Lawson, [4]Eugene Kulesha, [5]Paul F. Derwent, [6]Jay D Humphrey, [7]Daniel S T Hughes, [8]Stephen Keenan, [9]Arnaud Kerhornou, [10]Gautier Koscielny, ... [Full author list]Nucleic Acids Research [missing]DOI: 10.1093/NAR/GKR895 [ORCID]
PubMed: 22067447 [ORCID]
2011-11-08

Misc

TitleAuthors (identified)Published InIdentifier(s)TopicPublished DateMatch?
MuSE: accounting for tumor heterogeneity using a sample-specific error model improves sensitivity and specificity in mutation calling from sequencing data[1]Yu Fan, [2]Liu Xi, [3]Daniel S T Hughes, [4]Jianjun Zhang, [5]Jianhua Zhang, [6]P. Andrew Futreal, [7]David A Wheeler, [8]Wenyi Wang [Full author list]Genome Biology [missing]DOI: 10.1186/S13059-016-1029-6 [ORCID]
PubMed: 27557938 [ORCID]
2016-08-24
Extensive molecular differences between anterior- and posterior-half-sclerotomes underlie somite polarity and spinal nerve segmentation[1]Daniel S T Hughes, [2]Roger J Keynes, [3]David Tannahill [Full author list]BMC Developmental Biology [missing]DOI: 10.1186/1471-213X-9-30 [ORCID]
PubMed: 19463158 [ORCID]
2009-05-22

Potential author items

NameDescriptionAuthored itemsIdentifiersEmployer(s)
Daniel F. HughesU.S. herpetologist9ORCID: 0000-0001-5883-5324
ResearchGate Profile: Daniel_Hughes5
University of Illinois at Urbana–Champaign [missing]
Excelsior College [missing]
Coe College [missing]
Carnegie Museum of Natural History [missing]
University of Texas at El Paso [missing]
Shippensburg University of Pennsylvania [missing]
California State Polytechnic University, Humboldt [missing]
Daniel J Hughesresearcher (ORCID 0000-0003-2641-7632)3ORCID: 0000-0003-2641-7632
King's College London [missing]
Daniel R. HughesPh.D. University of Wisconsin-Madison 19553ISNI: 0000000115965735
VIAF ID: 12389452
University of Wisconsin–Madison [missing]
Daniel Hughesresearcher (ORCID 0000-0002-9706-5163)3ORCID: 0000-0002-9706-5163
Daniel Hughesresearcher (ORCID 0000-0002-7167-1325)2ORCID: 0000-0002-7167-1325
Oxford University Hospitals NHS Foundation Trust [missing]
Daniel HughesAmerican abolitionist0
Daniel HughesGaelic football player0
Daniel HughesAustralian rules footballer0
Daniel HughesAustralian cricketer0
Daniel HughesAustralian politician0
Daniel Hughesgame programmer0
Daniel HughesNew Zealand rugby union player0
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