| Title | Authors (identified) | Published In | Identifier(s) | Topic | Published Date | Match? |
|---|
| Retraction Note: AKT3-mediated IWS1 phosphorylation promotes the proliferation of EGFR-mutant lung adenocarcinomas through cell cycle-regulated U2AF2 RNA splicing | [1]Georgios I. Laliotis, [2]Evangelia Chavdoula, [3]Maria D. Paraskevopoulou, [4]Abdul Kaba, [5]Alessandro La Ferlita, [6]Satishkumar Singh, [7]Vollter Anastas, [8]Keith A. Nair, [9]Arturo Orlacchio, [10]Vasiliki Taraslia, [11]Ioannis Vlachos, [12]Marina Capece, [13]Artemis Hatzigeorgiou, [14]Dario Palmieri, [15]Christos Tsatsanis, [16]Salvatore Alaimo, [17]Lalit Sehgal, [18]David P. Carbone, [19]Vincenzo Coppola, [20]Philip N. Tsichlis [Full author list] | Nature Communications [missing] | DOI: 10.1038/S41467-022-31445-7 [ORCID]
PubMed: 35764644 [ORCID]
| | 2022-06-28 | |
| DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts | [1]Dimitra Karagkouni, [2]Maria D Paraskevopoulou, [3]Spyros Tastsoglou, [4]Giorgos Skoufos, [5]Anna Karavangeli, [6]Vasilis Pierros, [7]Elissavet Zacharopoulou, [8]Artemis G Hatzigeorgiou [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKZ1036 [ORCID]
PubMed: 31732741 [ORCID]
| | 2020-01-01 | |
| RNAcentral: a hub of information for non-coding RNA sequences | [2]Blake A Sweeney, [3]Anton I Petrov, [4]Boris Burkov, [5]Robert D. Finn, [6]Alex Bateman, [7]Maciej Szymanski, [8]Wojciech Karlowski, [9]Jan Gorodkin, [10]Stefan E Seemann, ..., [27]Jo Vandesompele, [28]Pieter-Jan Volders, [29]Maria Paraskevopoulou, [30]Lina Ma, [31]Zhang Zhang, ... [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKY1206 [ORCID]
PubMed: 30535383 [ORCID]
| RNACentral [missing] | 2018-12-08 | |
| RNAcentral: a hub of information for non-coding RNA sequences | [2]Blake A Sweeney, [3]Anton Petrov, [4]Boris Burkov, [5]Robert D. Finn, [6]Alex Bateman, [7]Maciej Szymanski, [8]Wojciech Karlowski, [9]Jan Gorodkin, [10]Stefan E Seemann, ..., [27]Jo Vandesompele, [28]Pieter-Jan Volders, [29]Maria Paraskevopoulou, [30]Lina Ma, [31]Zhang Zhang, ... [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKY1034 [ORCID]
PubMed: 30395267 [ORCID]
| RNACentral [missing] | 2018-11-05 | |
| microCLIP super learning framework uncovers functional transcriptome-wide miRNA interactions | [1]Maria D Paraskevopoulou, [2]Dimitra Karagkouni, [3]Ioannis S. Vlachos, [4]Spyros Tastsoglou, [5]Artemis G Hatzigeorgiou [Full author list] | Nature Communications [missing] | DOI: 10.1038/S41467-018-06046-Y [ORCID]
PubMed: 30190538 [ORCID]
| transcriptome [missing]; general chemistry [missing] | 2018-09-06 | |
| DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions | [1]Dimitra Karagkouni, [2]Maria D Paraskevopoulou, [3]Serafeim Chatzopoulos, [4]Ioannis S Vlachos, [5]Spyros Tastsoglou, [6]Ilias Kanellos, [7]Dimitris Papadimitriou, [8]Ioannis Kavakiotis, [9]Sofia Maniou, [10]Giorgos Skoufos, [11]Thanasis Vergoulis, [12]Theodore Dalamagas, [13]Artemis G Hatzigeorgiou [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKX1141 [ORCID]
PubMed: 29156006 [ORCID]
| | 2017-11-16 | |
| BUFET: boosting the unbiased miRNA functional enrichment analysis using bitsets | [1]Konstantinos Zagganas, [2]Thanasis Vergoulis, [3]Maria D Paraskevopoulou, [4]Ioannis S Vlachos, [5]Spiros Skiadopoulos, [6]Theodore Dalamagas [Full author list] | BMC Bioinformatics [missing] | DOI: 10.1186/S12859-017-1812-8 [ORCID]
PubMed: 28874117 [ORCID]
| bias [missing] | 2017-09-06 | |
| Neuronal ELAVL proteins utilize AUF-1 as a co-partner to induce neuron-specific alternative splicing of APP | [1]Apostolia Fragkouli, [2]Pelagia Koukouraki, [3]Ioannis S. Vlachos, [4]Maria D Paraskevopoulou, [5]Artemis G Hatzigeorgiou, [6]Epaminondas Doxakis [Full author list] | Scientific Reports [missing] | DOI: 10.1038/SREP44507 [ORCID]
PubMed: 28291226 [ORCID]
| alternative mRNA splicing, via spliceosome [missing] | 2017-03-14 | |
| Erratum to: The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species | [1]Alexie Papanicolaou, [2]Marc F Schetelig, [3]Peter Arensburger, [4]Peter W Atkinson, [5]Joshua B. Benoit, [6]Kostas Bourtzis, [7]Pedro Castañera, [8]John P Cavanaugh, [9]Hsu Chao, [10]Christopher P. Childers, ..., [41]Georg Oberhofer, [42]Félix Ortego, [43]Maria D Paraskevopoulou, [44]Monica F Poelchau, [45]Jiaxin Qu, ... [Full author list] | Genome Biology [missing] | DOI: 10.1186/S13059-017-1155-9 [ORCID]
PubMed: 28100280 [ORCID]
| invasive species [missing]; Ceratitis capitata [missing]; The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species [missing]; invasion biology [missing]; adaptive evolution [missing]; invasive pest [missing]; invasive pest species [missing] | 2017-01-18 | |
| RNAcentral: a comprehensive database of non-coding RNA sequences | [1]The RNAcentral Consortium, [2]Anton Petrov, [3]Simon Kay, [4]Ioanna Kalvari, [5]Kevin L Howe, [6]Kristian Gray, [7]Elspeth A Bruford, [8]Paul J Kersey, [9]Guy R. Cochrane, [10]Robert D. Finn, ..., [34]Runsheng Chen, [35]Weimin Zhu, [36]Maria D Paraskevopoulou, [37]Ioannis S. Vlachos, [38]Artemis G Hatzigeorgiou, ... [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKW1008 [ORCID]
PubMed: 27794554 [ORCID]
| non-coding RNA [missing]; RNACentral [missing] | 2016-10-28 | |
| The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species | [1]Alexie Papanicolaou, [2]Marc F Schetelig, [3]Peter Arensburger, [4]Peter W Atkinson, [5]Joshua B. Benoit, [6]Kostas Bourtzis, [7]Pedro Castañera, [8]John P Cavanaugh, [9]Hsu Chao, [10]Christopher P. Childers, ..., [41]Georg Oberhofer, [42]Félix Ortego, [43]Maria D Paraskevopoulou, [44]Monica F Poelchau, [45]Martin Reczko, ... [Full author list] | Genome Biology [missing] | DOI: 10.1186/S13059-016-1049-2 [ORCID]
PubMed: 27659211 [ORCID]
| invasive species [missing]; Ceratitis capitata [missing]; invasion biology [missing]; adaptive evolution [missing]; invasive pest [missing]; invasive pest species [missing]; evolution of biotic invasiveness [missing] | 2016-09-22 | |
| DIANA-TarBase and DIANA Suite Tools: Studying Experimentally Supported microRNA Targets | [1]Maria D Paraskevopoulou, [2]Ioannis S Vlachos, [3]Artemis G Hatzigeorgiou [Full author list] | Current Protocols in Bioinformatics [missing] | DOI: 10.1002/CPBI.12 [ORCID]
PubMed: 27603020 [ORCID]
| microRNA [missing] | 2016-09-07 | |
| DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data | [1]Ioannis S Vlachos, [2]Thanasis Vergoulis, [3]Maria D Paraskevopoulou, [4]Filopoimin Lykokanellos, [5]Georgios Georgakilas, [6]Penny Georgiou, [7]Serafeim Chatzopoulos, [8]Dimitra Karagkouni, [9]Foteini Christodoulou, [10]Theodore Dalamagas, [11]Artemis G Hatzigeorgiou [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKW455 [ORCID]
PubMed: 27207881 [ORCID]
| microRNA [missing] | 2016-05-20 | |
| DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts | [1]Maria D Paraskevopoulou, [2]Ioannis S. Vlachos, [3]Dimitra Karagkouni, [4]Georgios Georgakilas, [5]Ilias Kanellos, [6]Thanasis Vergoulis, [7]Konstantinos Zagganas, [8]Panayiotis Tsanakas, [9]Evangelos Floros, [10]Theodore Dalamagas, [11]Artemis G Hatzigeorgiou [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKV1270 [ORCID]
PubMed: 26612864 [ORCID]
| microRNA [missing]; RNA sequencing [missing] | 2015-11-26 | |
| DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators | [1]Georgios Georgakilas, [2]Ioannis S. Vlachos, [3]Konstantinos Zagganas, [4]Thanasis Vergoulis, [5]Maria D Paraskevopoulou, [6]Ilias Kanellos, [7]Panayiotis Tsanakas, [8]Dimitris Dellis, [9]Athanasios Fevgas, [10]Theodore Dalamagas, [11]Artemis G Hatzigeorgiou [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKV1254 [ORCID]
PubMed: 26586797 [ORCID]
| microRNA [missing] | 2015-11-19 | |
| DIANA-miRPath v3.0: deciphering microRNA function with experimental support | [1]Ioannis S. Vlachos, [2]Konstantinos Zagganas, [3]Maria D Paraskevopoulou, [4]Georgios Georgakilas, [5]Dimitra Karagkouni, [6]Thanasis Vergoulis, [7]Theodore Dalamagas, [8]Artemis G Hatzigeorgiou [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKV403 [ORCID]
PubMed: 25977294 [ORCID]
| microRNA [missing] | 2015-05-14 | |
| microTSS: accurate microRNA transcription start site identification reveals a significant number of divergent pri-miRNAs | [1]Georgios Georgakilas, [2]Ioannis S. Vlachos, [3]Maria D Paraskevopoulou, [4]Peter Yang, [5]Yuhong Zhang, [6]Aris Economides, [7]Artemis G Hatzigeorgiou [Full author list] | Nature Communications [missing] | DOI: 10.1038/NCOMMS6700 [ORCID]
PubMed: 25492647 [ORCID]
| microRNA [missing] | 2014-12-10 | |
| DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions | [1]Ioannis S. Vlachos, [2]Maria D Paraskevopoulou, [3]Dimitra Karagkouni, [4]Georgios Georgakilas, [5]Thanasis Vergoulis, [6]Ilias Kanellos, [7]Ioannis-Laertis Anastasopoulos, [8]Sofia Maniou, [9]Konstantina Karathanou, [10]Despina Kalfakakou, [11]Athanasios Fevgas, [12]Theodore Dalamagas, [13]Artemis G Hatzigeorgiou [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKU1215 [ORCID]
PubMed: 25416803 [ORCID]
| | 2014-11-21 | |
| BiDaS: a web-based Monte Carlo BioData Simulator based on sequence/feature characteristics | [1]Maria D Paraskevopoulou, [2]Ioannis S Vlachos, [3]Emmanouil Athanasiadis, [4]George Spyrou [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKT420 [ORCID]
PubMed: 23716644 [ORCID]
| | 2013-05-28 | |
| DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows | [1]Maria D Paraskevopoulou, [2]Georgios Georgakilas, [3]Nikos Kostoulas, [4]Ioannis S. Vlachos, [5]Thanasis Vergoulis, [6]Martin Reczko, [7]Christos Filippidis, [8]Theodore Dalamagas, [9]A G Hatzigeorgiou [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKT393 [ORCID]
PubMed: 23680784 [ORCID]
| web server [missing]; workflow [missing] | 2013-05-16 | |
| DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs | [1]Maria D Paraskevopoulou, [2]Georgios Georgakilas, [3]Nikos Kostoulas, [4]Martin Reczko, [5]Manolis Maragkakis, [6]Theodore M Dalamagas, [7]Artemis G Hatzigeorgiou [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKS1246 [ORCID]
PubMed: 23193281 [ORCID]
| microRNA [missing] | 2012-11-28 | |
| miRNA regulons associated with synaptic function | [1]Maria Paschou, [2]Maria D Paraskevopoulou, [3]Ioannis S. Vlachos, [4]Pelagia Koukouraki, [5]Artemis G Hatzigeorgiou, [6]Epaminondas Doxakis [Full author list] | PLOS One [missing] | DOI: 10.1371/JOURNAL.PONE.0046189 [ORCID]
PubMed: 23071543 [ORCID]
| | 2012-10-08 | |
| DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways | [1]Ioannis S. Vlachos, [2]Nikos Kostoulas, [3]Thanasis Vergoulis, [4]Georgios Georgakilas, [5]Martin Reczko, [6]Manolis Maragkakis, [7]Maria D Paraskevopoulou, [8]Kostantinos Prionidis, [9]Theodore Dalamagas, [10]Artemis G Hatzigeorgiou [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKS494 [ORCID]
PubMed: 22649059 [ORCID]
| microRNA [missing] | 2012-05-30 | |