| Title | Authors (identified) | Published In | Identifier(s) | Topic | Published Date |
|---|
| Capturing Wheat Phenotypes at the Genome Level | [1]Babar Hussain, [2]Bala A. Akpınar, [3]Michael Alaux, [4]Ahmed M. Algharib, [5]Deepmala Sehgal, [6]Zulfiqar Ali, [7]Gudbjorg I. Aradottir, [8]Jacqueline Batley, [9]Arnaud Bellec, [10]Alison R. Bentley, ..., [56]Selami Yazar, [57]Rudi Appels, [58]Hikmet Budak [Full author list] | Frontiers in Plant Science [curation] | DOI: 10.3389/FPLS.2022.851079
| | 2022-07-04 |
| G4Boost: a machine learning-based tool for quadruplex identification and stability prediction | [1]H. Busra Cagirici, [2]Hikmet Budak, [3]Taner Z Sen [Full author list] | BMC Bioinformatics [curation] | | | 2022-01-01 |
| Multiple Variant Calling Pipelines in Wheat Whole Exome Sequencing | [1]H Busra Cagirici, [2]Bala Ani Akpinar, [3]Taner Z Sen, [4]Hikmet Budak [Full author list] | International Journal of Molecular Sciences [curation] | DOI: 10.3390/IJMS221910400
PubMed: 34638743 | molecular biology [curation]; catalysis [curation]; Bwa [curation] | 2021-09-27 |
| mirMachine: A One-Stop Shop for Plant miRNA Annotation | [1]H. Busra Cagirici, [2]Taner Z Sen, [3]Hikmet Budak [Full author list] | Journal of Visualized Experiments [curation] | DOI: 10.3791/62430
| | 2021-05-01 |
| Genome-wide discovery of G-quadruplexes in barley | [1]H Busra Cagirici, [2]Hikmet Budak, [3]Taner Z Sen [Full author list] | Scientific Reports [curation] | DOI: 10.1038/S41598-021-86838-3
PubMed: 33846409 | | 2021-04-12 |
| Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential | [1]M Timothy Rabanus-Wallace, [2]Bernd Hackauf, [3]Martin Mascher, [4]Thomas Lux, [5]Thomas Wicker, [6]Heidrun Gundlach, [7]Mariana Baez, [8]Andreas Houben, [9]Klaus Mayer, [10]Liangliang Gao, ..., [15]Coraline Rosalie Praz, [16]Mona Schreiber, [17]Hikmet Budak, [18]Matthias Heuberger, [19]Burkhard Steuernagel, ... [Full author list] | Nature Genetics [curation] | DOI: 10.1038/S41588-021-00807-0
PubMed: 33737754 | agronomics [curation] | 2021-03-18 |
| LncMachine: a machine learning algorithm for long noncoding RNA annotation in plants | [1]H. Busra Cagirici, [2]S. Galvez, [3]Taner Z Sen, [4]Hikmet Budak [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-021-00769-W
| | 2021-02-26 |
| The barley pan-genome reveals the hidden legacy of mutation breeding | [1]Murukarthick Jayakodi, [2]Sudharsan Padmarasu, [3]Georg Haberer, [4]Venkata S Bonthala, [5]Heidrun Gundlach, [6]Cécile Monat, [7]Thomas Lux, [8]Nadia Kamal, [9]Daniel Lang, [10]Axel Himmelbach, ..., [22]Yu Guo, [23]Anne Fiebig, [24]Hikmet Budak, [25]Dongdong Xu, [26]Jing Zhang, ... [Full author list] | Nature [curation] | DOI: 10.1038/S41586-020-2947-8
PubMed: 33239781 | | 2020-11-25 |
| Multiple wheat genomes reveal global variation in modern breeding | [1]Sean Walkowiak, [2]Liangliang Gao, [3]Cécile Monat, [4]Georg Haberer, [5]Mulualem T Kassa, [6]Jemima Brinton, [7]Ricardo Ramirez-Gonzalez, [8]Markus C Kolodziej, [9]Emily Delorean, [10]Dinushika Thambugala, ..., [61]David Swarbreck, [62]James Cockram, [63]Hikmet Budak, [64]Toshiaki Tameshige, [65]Tsuyoshi Tanaka, ... [Full author list] | Nature [curation] | DOI: 10.1038/S41586-020-2961-X
PubMed: 33239791 | | 2020-11-25 |
| Author Correction: Mapping QTLs conferring salt tolerance and micronutrient concentrations at seedling stage in wheat | [1]Babar Hussain, [2]Stuart James Lucas, [3]Levent Ozturk, [4]Hikmet Budak [Full author list] | Scientific Reports [curation] | DOI: 10.1038/S41598-020-75482-Y
PubMed: 33087828 | halotolerance [curation] | 2020-10-22 |
| Plasmonic Selection of ssDNA Aptamers against Fibroblast Growth Factor Receptor | [1]Hasan Kurt, [2]Alp Ertunga Eyüpoğlu, [3]Tolga Sütlü, [4]Hikmet Budak, [5]Meral Yuce [Full author list] | ACS combinatorial science [curation] | DOI: 10.1021/ACSCOMBSCI.9B00059
PubMed: 31265241 | | 2019-07-02 |
| Durum wheat genome highlights past domestication signatures and future improvement targets | [1]Marco Maccaferri, [2]Neil S Harris, [3]Sven Twardziok, [4]Raj K Pasam, [5]Heidrun Gundlach, [6]Manuel Spannagl, [7]Danara Ormanbekova, [8]Thomas Lux, [9]Verena M Prade, [10]Sara G Milner, ..., [54]Gregory J Taylor, [55]Ron E. Knox, [56]Hikmet Budak, [57]Anna Maria Mastrangelo, [58]Steven S Xu, ... [Full author list] | Nature Genetics [curation] | DOI: 10.1038/S41588-019-0381-3
PubMed: 30962619 | | 2019-04-08 |
| Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat | [1]Laura-Jayne Gardiner, [2]Thomas Brabbs, [3]Alina Akhunov, [4]Katherine Jordan, [5]Hikmet Budak, [6]Todd Richmond, [7]Sukhwinder Singh, [8]Leah Catchpole, [9]Eduard Akhunov, [10]Anthony Hall [Full author list] | GigaScience [curation] | DOI: 10.1093/GIGASCIENCE/GIZ018
PubMed: 30715311 | Plant Genomes [curation] | 2019-04-01 |
| THROUGH THE LOOKING GLASS: Real-Time Imaging in Brachypodium Roots and Osmotic Stress Analysis | [1]Zaeema Khan, [2]Hande Karamahmutoğlu, [3]Meltem Elitaş, [4]Meral Yuce, [5]Hikmet Budak [Full author list] | Plants [curation] | DOI: 10.3390/PLANTS8010014
PubMed: 30625995 | Brachypodium [curation]; PDMS [curation]; neutral red [curation] | 2019-01-08 |
| Through the Looking Glass: Real Time Imaging in Brachypodium Roots and Osmotic Stress Analysis | [1]Zaeema Khan, [2]Hande Karamahmutoglu, [3]Meltem Elitas, [4]Meral Yuce, [5]Hikmet Budak [Full author list] | | DOI: 10.20944/PREPRINTS201811.0456.V1
| | 2018-11-19 |
| Hotspots in the genomic architecture of field drought responses in wheat as breeding targets | [1]Sergio Gálvez, [2]Rosa Mérida-García, [3]Carlos Camino, [4]Philippa Borrill, [5]Michael Abrouk, [6]Ricardo H Ramírez-González, [7]Sezgi Biyiklioglu, [8]Francisco Amil-Ruiz, [9]IWGSC, [10]Gabriel Dorado, [11]Hikmet Budak, [12]Victoria Gonzalez-Dugo, [13]Pablo J Zarco-Tejada, [14]Rudi Appels, [15]Cristobal Uauy, [16]P Hernández [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-018-0639-3
PubMed: 30446876 | | 2018-11-16 |
| Correction to: A large-scale multiomics analysis of wheat stem solidness and the wheat stem sawfly feeding response, and syntenic associations in barley, Brachypodium, and rice | [1]Sezgi Biyiklioglu, [2]Burcu Alptekin, [3]B Ani Akpinar, [4]Andrea C Varella, [5]Megan L Hofland, [6]David K Weaver, [7]Brian Bothner, [8]Hikmet Budak [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-018-0627-7
PubMed: 29982858 | wheat [curation]; barley [curation] | 2018-09-01 |
| CRISPR/Cas9 in plants: at play in the genome and at work for crop improvement | [1]Babar Hussain, [2]Stuart James Lucas, [3]Hikmet Budak [Full author list] | Briefings in functional genomics [curation] | DOI: 10.1093/BFGP/ELY016
PubMed: 29912293 | CRISPR [curation]; Cas9 [curation] | 2018-09-01 |
| Plant Small Non-coding RNAs and Their Roles in Biotic Stresses | [1]Eleanor J Brant, [2]Hikmet Budak [Full author list] | Frontiers in Plant Science [curation] | DOI: 10.3389/FPLS.2018.01038
PubMed: 30079074 | | 2018-07-20 |
| Chromosome-based survey sequencing reveals the genome organization of wild wheat progenitor Triticum dicoccoides | [1]Bala Ani Akpinar, [2]Sezgi Biyiklioglu, [3]Burcu Alptekin, [4]Miroslava Havránková, [5]Jan Vrána, [6]Jaroslav Doležel, [7]Assaf Distelfeld, [8]P Hernández, [9]IWGSC, [10]Hikmet Budak [Full author list] | Plant Biotechnology Journal [curation] | DOI: 10.1111/PBI.12940
PubMed: 29729062 | biotechnology [curation]; Triticum [curation]; wheat [curation]; Triticum dicoccoides [curation] | 2018-06-13 |
| A large-scale multiomics analysis of wheat stem solidness and the wheat stem sawfly feeding response, and syntenic associations in barley, Brachypodium, and rice | [1]Sezgi Biyiklioglu, [2]Burcu Alptekin, [3]Bala Ani Akpinar, [4]Andrea C Varella, [5]Megan L Hofland, [6]David K Weaver, [7]Brian Bothner, [8]Hikmet Budak [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-017-0585-5
PubMed: 29470681 | wheat [curation]; barley [curation] | 2018-02-22 |
| Application of Tissue Culture and Transformation Techniques in Model Species Brachypodium distachyon | [1]Bahar Sogutmaz Ozdemir, [2]Hikmet Budak [Full author list] | Methods in Molecular Biology [curation] | DOI: 10.1007/978-1-4939-7278-4_18
PubMed: 29039016 | model organism [curation]; Brachypodium distachyon [curation] | 2018-01-01 |
| Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure | [1]Sean P Gordon, [2]Bruno Contreras-Moreira, [3]Daniel P Woods, [4]David L Des Marais, [5]Diane Burgess, [6]Shengqiang Shu, [7]Christoph Stritt, [8]Anne C Roulin, [9]Wendy Schackwitz, [10]Ludmila Tyler, ..., [15]Kerrie Barry, [16]Koen Geuten, [17]Hikmet Budak, [18]Thomas E. Juenger, [19]Richard Amasino, ... [Full author list] | Nature Communications [curation] | DOI: 10.1038/S41467-017-02292-8
PubMed: 29259172 | Brachypodium distachyon [curation]; population structure [curation] | 2017-12-19 |
| Comparative metabolite profiling of drought stress in roots and leaves of seven Triticeae species | [1]Naimat Ullah, [2]Meral Yüce, [3]Z Neslihan Öztürk Gökçe, [4]Hikmet Budak [Full author list] | BMC Genomics [curation] | DOI: 10.1186/S12864-017-4321-2
PubMed: 29246190 | drought [curation]; Triticeae [curation] | 2017-12-15 |
| Mapping QTLs conferring salt tolerance and micronutrient concentrations at seedling stagein wheat | [1]Babar Hussain, [2]Stuart James Lucas, [3]Levent Ozturk, [4]Hikmet Budak [Full author list] | Scientific Reports [curation] | DOI: 10.1038/S41598-017-15726-6
PubMed: 29142238 | halotolerance [curation]; wheat [curation] | 2017-11-15 |
| Assembly and Annotation of Transcriptome Provided Evidence of miRNA Mobility between Wheat and Wheat Stem Sawfly | [1]Halise B Cagirici, [2]Sezgi Biyiklioglu, [3]Hikmet Budak [Full author list] | Frontiers in Plant Science [curation] | DOI: 10.3389/FPLS.2017.01653
PubMed: 29038661 | transcriptome [curation]; wheat [curation] | 2017-09-26 |
| CRISPR/Cas9 genome editing in wheat. | [1]Dongjin Kim, [2]Burcu Alptekin, [3]Hikmet Budak [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-017-0572-X
PubMed: 28918562 | CRISPR [curation]; wheat [curation]; Cas9 [curation] | 2017-09-16 |
| RNA Sequencing and Co-expressed Long Non-coding RNA in Modern and Wild Wheats | [1]Halise Busra Cagirici, [2]Burcu Alptekin, [3]Hikmet Budak [Full author list] | Scientific Reports [curation] | DOI: 10.1038/S41598-017-11170-8
PubMed: 28878329 | non-coding RNA [curation]; wheat [curation] | 2017-09-06 |
| Wild emmer genome architecture and diversity elucidate wheat evolution and domestication | [1]Raz Avni, [2]Moran Nave, [3]Omer Barad, [4]Kobi Baruch, [5]Sven Twardziok, [6]Heidrun Gundlach, [7]Iago Hale, [8]Martin Mascher, [9]Manuel Spannagl, [10]Krystalee Wiebe, ..., [19]Allan Fritz, [20]Roi Ben-David, [20-Q86431843]Roi Ben-David, [21]Hikmet Budak, [22]Tzion Fahima, [23]Abraham Korol, ... [Full author list] | Science [curation] | DOI: 10.1126/SCIENCE.AAN0032
PubMed: 28684525 | domestication [curation]; wheat [curation] | 2017-07-01 |
| High-throughput SNP genotyping of modern and wild emmer wheat for yield and root morphology using a combined association and linkage analysis | [1]Stuart J Lucas, [2]Ayten Salantur, [3]Selami Yazar, [4]Hikmet Budak [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-017-0563-Y
PubMed: 28550605 | wheat [curation] | 2017-05-26 |
| Intensive herbicide use has selected for constitutively elevated levels of stress-responsive mRNAs and proteins in multiple herbicide-resistant Avena fatua L. | [1]Barbara K Keith, [2]Erin E Burns, [3]Brian Bothner, [4]Charles C Carey, [5]Aurélien J Mazurie, [6]Jonathan K Hilmer, [7]Sezgi Biyiklioglu, [8]Hikmet Budak, [9]William Edward Dyer [Full author list] | Pest Management Science [curation] | DOI: 10.1002/PS.4605
PubMed: 28485049 | Avena fatua [curation]; herbicide resistance [curation] | 2017-05-09 |
| Abiotic stress miRNomes in the Triticeae | [1]Burcu Alptekin, [2]Peter Langridge, [2-Q61304880]Peter Langridge, [3]Hikmet Budak [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-016-0525-9
PubMed: 27665284 | eukaryote [curation]; stress [curation]; Triticeae [curation]; microRNA [curation]; physiological phenomenon [curation] | 2017-05-01 |
| Microfabricated tools for quantitative plant biology | [1]Meltem Elitaş, [1-Q89275175]Meltem Elitaş, [2]Meral Yüce, [2-Q60977283]Meral Yuce, [3]Hikmet Budak [Full author list] | Analyst [curation] | DOI: 10.1039/C6AN02643E
PubMed: 28197569 | microfabrication [curation] | 2017-03-01 |
| MicroRNAs in model and complex organisms. | [1]Hikmet Budak, [2]Baohong Zhang [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-017-0544-1
PubMed: 28220336 | microRNA [curation] | 2017-02-20 |
| Bioconjugated nanomaterials for monitoring food contamination | [1]Babar Hussain, [2]Meral Yüce, [3]Naimat Ullah, [4]Hikmet Budak [Full author list] | | DOI: 10.1016/B978-0-12-804301-1.00003-5
| nanomaterial [curation] | 2017-01-01 |
| A large-scale chromosome-specific SNP discovery guideline | [1]Bala Ani Akpinar, [2]Stuart Lucas, [3]Hikmet Budak [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-016-0536-6
PubMed: 27900504 | | 2016-11-29 |
| Dissecting miRNAs in Wheat D Genome Progenitor, Aegilops tauschii | [1]Bala Ani Akpinar, [2]Hikmet Budak [Full author list] | Frontiers in Plant Science [curation] | DOI: 10.3389/FPLS.2016.00606
PubMed: 27200073 | Aegilops tauschii [curation] | 2016-05-04 |
| In silico search and biological validation of microRNAs related to drought response in peach and almond | [1]Fazileh Esmaeili, [2]Behrouz Shiran, [3]Hossein Fallahi, [4]Neda Mirakhorli, [5]Hikmet Budak, [6]Pedro Martínez-Gómez [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-016-0488-X
PubMed: 27068847 | drought [curation]; microRNA [curation] | 2016-04-11 |
| Wheat miRNA ancestors: evident by transcriptome analysis of A, B, and D genome donors | [1]Burcu Alptekin, [2]Hikmet Budak [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-016-0487-Y
PubMed: 27032785 | transcriptome [curation]; RNA sequencing [curation]; wheat [curation] | 2016-03-31 |
| Dual-excitation upconverting nanoparticle and quantum dot aptasensor for multiplexed food pathogen detection | [1]Hasan Kurt, [2]Meral Yüce, [3]Babar Hussain, [4]Hikmet Budak [Full author list] | Biosensors & Bioelectronics [curation] | DOI: 10.1016/J.BIOS.2016.03.005
PubMed: 26971274 | nanoparticle [curation]; quantum dot [curation] | 2016-03-04 |
| Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) | [1]Daniel J. Klionsky, [2]Kotb Abdelmohsen, [3]Akihisa Abe, [4]Md Joynal Abedin, [5]Hagai Abeliovich, [6]Abraham Acevedo-Arozena, [7]Hiroaki Adachi, [8]Christopher M Adams, [9]Peter D Adams, [10]Khosrow Adeli, ..., [214]Shilpa Buch, [215]Alastair M Buchan, [216]Hikmet Budak, [217]Dmitry V Bulavin, [218]Scott J Bultman, ... [Full author list] | Autophagy [curation] | DOI: 10.1080/15548627.2015.1100356
PubMed: 26799652 | cell biology [curation]; autophagy [curation] | 2016-01-02 |
| A Comprehensive Prescription for Plant miRNA Identification | [1]Burcu Alptekin, [2]Bala Ani Akpinar, [3]Hikmet Budak [Full author list] | Frontiers in Plant Science [curation] | DOI: 10.3389/FPLS.2016.02058
PubMed: 28174574 | | 2016-01-01 |
| NaB integrated graphene oxide membranes for enhanced cell viability and stem cell properties of human adipose stem cells | [1]V. R. S. S. Mokkapati, [2]Neslihan P. Tasli, [3]Zaeema Khan, [4]Ali Tufani, [5]Santosh Pandit, [6]Hikmet Budak, [7]Fikrettin Sahin [Full author list] | RSC Advances [curation] | DOI: 10.1039/C6RA07414F
| graphene [curation] | 2016-01-01 |
| From Genetics to Functional Genomics: Improvement in Drought Signaling and Tolerance in Wheat | [1]Hikmet Budak, [2]Babar Hussain, [3]Zaeema Khan, [4]Neslihan Z Ozturk, [5]Naimat Ullah [Full author list] | Frontiers in Plant Science [curation] | DOI: 10.3389/FPLS.2015.01012
PubMed: 26635838 | drought [curation]; functional genomics [curation]; wheat [curation] | 2015-11-19 |
| Differential expression of seven conserved microRNAs in response to abiotic stress and their regulatory network in Helianthus annuus | [1]Reyhaneh Ebrahimi Khaksefidi, [2]Shirin Mirlohi, [3]Fahimeh Khalaji, [4]Zahra Fakhari, [5]Behrouz Shiran, [6]Hossein Fallahi, [7]Fariba Rafiei, [8]Hikmet Budak, [9]Esmaeil Ebrahimie [Full author list] | Frontiers in Plant Science [curation] | DOI: 10.3389/FPLS.2015.00741
PubMed: 26442054 | common sunflower [curation]; microRNA [curation] | 2015-09-17 |
| Amplification yield enhancement of short DNA templates using bulk and surface-attached amine-functionalized single-wall carbon nanotubes | [1]Meral Yüce, [2]Ebru Uysal, [3]Hikmet Budak [Full author list] | Applied Surface Science [curation] | DOI: 10.1016/J.APSUSC.2015.04.216
| carbon nanotube [curation]; single-walled carbon nanotube [curation] | 2015-09-01 |
| Looking back at the past and projecting ahead to the future. | [1]Hikmet Budak [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-015-0455-Y
PubMed: 26231512 | | 2015-08-01 |
| Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress | [1]Bala Ani Akpinar, [2]Melda Kantar, [3]Hikmet Budak [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-015-0453-0
PubMed: 26174050 | drought [curation]; microRNA [curation]; wheat [curation] | 2015-07-15 |
| MicroRNA nomenclature and the need for a revised naming prescription | [1]Hikmet Budak, [2]Reyyan Bulut, [3]Melda Kantar, [4]Burcu Alptekin [Full author list] | Briefings in functional genomics [curation] | DOI: 10.1093/BFGP/ELV026
PubMed: 26148500 | microRNA [curation] | 2015-07-06 |
| Trends in aptamer selection methods and applications | [1]Meral Yüce, [2]Naimat Ullah, [3]Hikmet Budak [Full author list] | Analyst [curation] | DOI: 10.1039/C5AN00954E
PubMed: 26114391 | | 2015-07-01 |
| Plant miRNAs: biogenesis, organization and origins | [1]Hikmet Budak, [2]B Ani Akpinar, [2-Q56908999]Bala Ani Akpinar [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-015-0451-2
PubMed: 26113396 | | 2015-06-26 |
| Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides | [1]Bala Ani Akpinar, [2]Meral Yuce, [3]Stuart Lucas, [4]Jan Vrána, [5]Veronika Burešová, [6]Jaroslav Doležel, [7]Hikmet Budak [Full author list] | Scientific Reports [curation] | DOI: 10.1038/SREP10763
PubMed: 26084265 | Triticum [curation]; wheat [curation]; Triticum dicoccoides [curation] | 2015-06-18 |
| The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements | [1]Bala Ani Akpinar, [2]Federica Magni, [3]Meral Yuce, [4]Stuart J Lucas, [5]Hana Šimková, [6]Jan Safář, [7]Sonia Vautrin, [8]Hélène Bergès, [9]Federica Cattonaro, [10]Jaroslav Doležel, [11]Hikmet Budak [Full author list] | BMC Genomics [curation] | DOI: 10.1186/S12864-015-1641-Y
PubMed: 26070810 | gene duplication [curation]; wheat [curation] | 2015-06-13 |
| Harnessing NGS and Big Data Optimally: Comparison of miRNA Prediction from Assembled versus Non-assembled Sequencing Data--The Case of the Grass Aegilops tauschii Complex Genome | [1]Hikmet Budak, [2]Melda Kantar [Full author list] | OMICS A Journal of Integrative Biology [curation] | DOI: 10.1089/OMI.2015.0038
PubMed: 26061358 | big data [curation]; Aegilops tauschii [curation] | 2015-06-10 |
| Stress responsive miRNAs and isomiRs in cereals | [1]Hikmet Budak, [2]Melda Kantar, [3]Reyyan Bulut, [4]Bala Ani Akpinar [Full author list] | Plant Science [curation] | DOI: 10.1016/J.PLANTSCI.2015.02.008
PubMed: 25900561 | | 2015-02-20 |
| Zn-Deficiency Responsive Transcripts in Agrostis Species Revealed by mRNA Differential Display | [1]Bala Ani Akpinar, [2]Ozge Canli, [3]Hikmet Budak [Full author list] | | DOI: 10.1007/978-3-319-08714-6_7
| | 2015-01-01 |
| Sequencing chromosome 5D of Aegilops tauschii and comparison with its allopolyploid descendant bread wheat (Triticum aestivum). | [1]Bala Ani Akpinar, [2]Stuart J Lucas, [3]Jan Vrána, [3-Q39701472]Jan Vrána, [4]Jaroslav Doležel, [5]Hikmet Budak [Full author list] | Plant Biotechnology Journal [curation] | DOI: 10.1111/PBI.12302
PubMed: 25516153 | bread [curation]; Triticum aestivum [curation]; Aegilops tauschii [curation]; wheat [curation] | 2014-12-16 |
| Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications | [1]Stuart J Lucas, [2]Bala Ani Akpinar, [3]Hana Šimková, [4]Marie Kubaláková, [5]Jaroslav Doležel, [6]Hikmet Budak [Full author list] | BMC Genomics [curation] | DOI: 10.1186/1471-2164-15-1080
PubMed: 25487001 | gene duplication [curation]; wheat [curation] | 2014-12-09 |
| Dispersion quality of amine functionalized multiwall carbon nanotubes plays critical roles in polymerase chain reaction enhancement | [1]Meral Yuce, [2]Hikmet Budak [Full author list] | Journal of Nanoparticle Research [curation] | DOI: 10.1007/S11051-014-2768-5
| carbon nanotube [curation] | 2014-12-01 |
| Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines | [1]Sean P Gordon, [2]Henry Priest, [3]David L Des Marais, [4]Wendy Schackwitz, [5]Melania Figueroa, [6]Joel Martin, [7]Jennifer N Bragg, [8]Ludmila Tyler, [9]Cheng-Ruei Lee, [10]Doug Bryant, ..., [14]Kerrie Barry, [15]David F Garvin, [16]Hikmet Budak, [17]Metin Tuna, [18]Thomas Mitchell-Olds, ... [Full author list] | The Plant Journal [curation] | DOI: 10.1111/TPJ.12569
PubMed: 24888695 | biodiversity [curation]; Brachypodium distachyon [curation] | 2014-07-15 |
| History and current status of wheat miRNAs using next-generation sequencing and their roles in development and stress | [1]Hikmet Budak, [2]Zaeema Khan, [3]Melda Kantar [Full author list] | Briefings in functional genomics [curation] | DOI: 10.1093/BFGP/ELU021
PubMed: 24962995 | wheat [curation] | 2014-06-23 |
| Phenotypic and genotypic variability for durable resistance to yellow rust (Puccinia striiformisf. sp.tritici) in Pakistan wheat cultivars | [1]Naimat Ullah, [2]Hadi Bux, [3]Abdul Samad Mumtaz, [4]Sadaf Tabasum Qureshi, [5]Mahboob Ali Sial, [6]Hikmet Budak [Full author list] | Archives of Phytopathology and Plant Protection [curation] | DOI: 10.1080/03235408.2014.882534
| Pakistan [curation]; plant pathology [curation] | 2014-02-10 |
| New wheat microRNA using whole-genome sequence | [1]Kuaybe Yucebilgili Kurtoglu, [2]Melda Kantar, [3]Hikmet Budak [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-013-0357-9
PubMed: 24395439 | microRNA [curation]; whole genome sequencing [curation]; wheat [curation] | 2014-01-07 |
| Characterization of a dual biotin tag for improved single stranded DNA production | [1]Meral Yuce, [2]Hasan Kurt, [3]Hikmet Budak [Full author list] | Analytical Methods [curation] | DOI: 10.1039/C3AY41899E
| | 2014-01-01 |
| Employment of nanomaterials in polymerase chain reaction: insight into the impacts and putative operating mechanisms of nano-additives in PCR | [1]Meral Yuce, [2]Hasan Kurt, [3]Venkata R. S. S. Mokkapati, [4]Hikmet Budak [Full author list] | RSC Advances [curation] | DOI: 10.1039/C4RA06144F
| nanomaterial [curation] | 2014-01-01 |
| Exploring the interaction between small RNAs and R genes during Brachypodium response to Fusarium culmorum infection | [1]Stuart James Lucas, [2]Kubilay Baştaş, [3]Hikmet Budak [Full author list] | Gene [curation] | DOI: 10.1016/J.GENE.2013.12.025
PubMed: 24368332 | Fusarium culmorum [curation] | 2013-12-22 |
| Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. | [1]Caroline Pont, [2]Florent Murat, [3]Sébastien Guizard, [4]Raphael Flores, [5]Séverine Foucrier, [6]Yannick Bidet, [7]Umar Masood Quraishi, [8]Michael Alaux, [9]Jaroslav Doležel, [10]Tzion Fahima, [11]Hikmet Budak, [12]Beat Keller, [13]Silvio Salvi, [14]Marco Maccaferri, [15]Delphine Steinbach, [16]Catherine Feuillet, [17]Hadi Quesneville, [18]Jérôme Salse [Full author list] | The Plant Journal [curation] | DOI: 10.1111/TPJ.12366
PubMed: 24164652 | wheat [curation] | 2013-11-29 |
| Analysis and Exploitation of Cereal Genomes with the Aid of Brachypodium | [1]Hikmet Budak, [2]Pilar Hernandez, [3]Alan H. Schulman [Full author list] | | DOI: 10.1007/978-94-007-7572-5_24
| | 2013-11-07 |
| Unique and conserved microRNAs in wheat chromosome 5D revealed by next-generation sequencing | [1]Kuaybe Yucebilgili Kurtoglu, [2]Melda Kantar, [3]Stuart J Lucas, [4]Hikmet Budak [Full author list] | PLOS One [curation] | DOI: 10.1371/JOURNAL.PONE.0069801
PubMed: 23936103 | wheat [curation] | 2013-07-23 |
| Genomics approaches for crop improvement against abiotic stress. | [1]Bala Ani Akpinar, [2]Stuart James Lucas, [3]Hikmet Budak [Full author list] | The Scientific World Journal [curation] | DOI: 10.1155/2013/361921
PubMed: 23844392 | stress [curation]; genomics [curation]; crop [curation]; genetically modified plant [curation]; genetic enhancement [curation] | 2013-06-06 |
| Drought tolerance in modern and wild wheat | [1]Hikmet Budak, [2]Melda Kantar, [3]Kuaybe Yucebilgili Kurtoglu [Full author list] | The Scientific World Journal [curation] | DOI: 10.1155/2013/548246
PubMed: 23766697 | Triticum [curation]; drought [curation]; plant disease [curation]; genetically modified plant [curation]; wheat cultivar [curation]; genetic enhancement [curation] | 2013-05-15 |
| Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A. | [1]Stuart J Lucas, [2]Bala Ani Akpinar, [3]Melda Kantar, [4]Zohar B Weinstein, [5]Fatma Aydınoğlu, [6]Jan Safář, [7]Hana Šimková, [8]Zeev Frenkel, [9]Abraham Korol, [10]Federica Magni, [11]Federica Cattonaro, [12]Sonia Vautrin, [13]Arnaud Bellec, [14]Hélène Bergès, [15]Jaroslav Doležel, [16]Hikmet Budak [Full author list] | PLOS One [curation] | DOI: 10.1371/JOURNAL.PONE.0059542
PubMed: 23613713 | wheat [curation] | 2013-04-16 |
| Proteome changes in wild and modern wheat leaves upon drought stress by two-dimensional electrophoresis and nanoLC-ESI-MS/MS. | [1]Hikmet Budak, [2]Bala Ani Akpinar, [3]Turgay Unver, [4]Mine Turktas [Full author list] | Plant Molecular Biology [curation] | DOI: 10.1007/S11103-013-0024-5
PubMed: 23443681 | drought [curation]; electrophoresis [curation]; wheat [curation] | 2013-02-27 |
| Plant abiotic stress signaling | [1]B Ani Akpinar, [2]Bihter Avsar, [3]Stuart J Lucas, [4]Hikmet Budak [Full author list] | Plant Signaling and Behavior [curation] | DOI: 10.4161/PSB.21894
PubMed: 22990453 | | 2012-09-18 |
| In Planta Evidence for the Involvement of a Ubiquitin Conjugating Enzyme (UBC E2 clade) in Negative Regulation of Disease Resistance | [1]Turgay Unver, [2]Mine Turktas, [3]Hikmet Budak [Full author list] | Plant Molecular Biology Reporter [curation] | DOI: 10.1007/S11105-012-0502-Y
| | 2012-09-04 |
| Sorting the wheat from the chaff: identifying miRNAs in genomic survey sequences of Triticum aestivum chromosome 1AL. | [1]Stuart J Lucas, [2]Hikmet Budak [Full author list] | PLOS One [curation] | DOI: 10.1371/JOURNAL.PONE.0040859
PubMed: 22815845 | Triticum [curation]; Triticum aestivum [curation]; wheat [curation] | 2012-07-17 |
| Subgenomic analysis of microRNAs in polyploid wheat | [1]Melda Kantar, [2]Bala Ani Akpinar, [3]Miroslav Valárik, [4]Stuart J Lucas, [5]Jaroslav Doležel, [6]Pilar Hernández, [7]Hikmet Budak, [8]International Wheat Genome Sequencing Consortium [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-012-0285-0
PubMed: 22592659 | polyploidy [curation]; microRNA [curation]; wheat [curation] | 2012-05-17 |
| Autophagy-related gene, TdAtg8, in wild emmer wheat plays a role in drought and osmotic stress response | [1]Duygu Kuzuoglu-Ozturk, [2]Ozge Cebeci Yalcinkaya, [3]Bala Ani Akpinar, [4]Geraldine Mitou, [5]Gozde Korkmaz, [6]Devrim Gözüaçık, [7]Hikmet Budak [Full author list] | Planta [curation] | DOI: 10.1007/S00425-012-1657-3
PubMed: 22569921 | drought [curation]; autophagy [curation]; wheat [curation] | 2012-05-09 |
| Dehydration stress-responsive miRNA in Brachypodium distachyon: evident by genome-wide screening of microRNAs expression | [1]Hikmet Budak, [2]Ani Akpinar, [2-Q56908999]Bala Ani Akpinar [Full author list] | OMICS A Journal of Integrative Biology [curation] | DOI: 10.1089/OMI.2011.0073
PubMed: 22122669 | microRNA [curation]; Brachypodium distachyon [curation] | 2011-11-01 |
| Functional features of a single chromosome arm in wheat (1AL) determined from its structure | [1]Stuart J Lucas, [2]Hana Šimková, [3]Jan Safář, [4]Irena Jurman, [5]Federica Cattonaro, [6]Sonia Vautrin, [7]Arnaud Bellec, [8]Hélène Berges, [9]Jaroslav Doležel, [10]Hikmet Budak [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-011-0250-3
PubMed: 21892730 | wheat [curation] | 2011-09-03 |
| Brachypodium as a model for the grasses: today and the future | [1]Jelena Brkljacic, [2]Erich Grotewold, [3]Randy Scholl, [4]Todd C Mockler, [5]David F Garvin, [6]Philippe Vain, [7]Thomas Brutnell, [8]Richard Sibout, [9]Michael Bevan, [10]Hikmet Budak, [11]Ana L Caicedo, [12]Caixia Gao, ... [Full author list] | Plant Physiology [curation] | DOI: 10.1104/PP.111.179531
PubMed: 21771916 | | 2011-07-19 |
| Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives | [1]Thomas Wicker, [2]Klaus Mayer, [3]Heidrun Gundlach, [4]Mihaela M Martis, [5]Burkhard Steuernagel, [6]Uwe Scholz, [7]Hana Šimková, [8]Marie Kubaláková, [9]Frédéric Choulet, [10]Stefan Taudien, [11]Matthias Platzer, [12]Catherine Feuillet, [13]Tzion Fahima, [14]Hikmet Budak, [15]Jaroslav Doležel, [16]Beat Keller, [17]Nils Stein [Full author list] | The Plant Cell [curation] | DOI: 10.1105/TPC.111.086629
PubMed: 21622801 | wheat [curation]; barley [curation] | 2011-05-27 |
| TMPIT1 from wild emmer wheat: first characterisation of a stress-inducible integral membrane protein | [1]Stuart Lucas, [2]Esen Dogan, [3]Hikmet Budak [Full author list] | Gene [curation] | DOI: 10.1016/J.GENE.2011.05.003
PubMed: 21635942 | membrane protein [curation]; wheat [curation] | 2011-05-19 |
| The drought response displayed by a DRE-binding protein from Triticum dicoccoides | [1]Stuart Lucas, [2]Emel Durmaz, [3]Bala Ani Akpinar, [4]Hikmet Budak [Full author list] | Plant Physiology and Biochemistry [curation] | DOI: 10.1016/J.PLAPHY.2011.01.016
PubMed: 21296583 | Triticum [curation]; drought [curation]; Triticum dicoccoides [curation] | 2011-01-21 |
| Drought Stress | [1]Melda Kantar, [2]Stuart J. Lucas, [3]Hikmet Budak [Full author list] | Advances in Botanical Research [curation] | DOI: 10.1016/B978-0-12-387692-8.00013-8
| drought [curation] | 2011-01-01 |
| miRNA expression patterns of Triticum dicoccoides in response to shock drought stress | [1]Melda Kantar, [2]Stuart J Lucas, [3]Hikmet Budak [Full author list] | Planta [curation] | DOI: 10.1007/S00425-010-1309-4
PubMed: 21069383 | Triticum [curation]; drought [curation]; Triticum dicoccoides [curation]; microRNA expression [curation] | 2010-11-11 |
| Expression and Cellular Localization of ZIP1 Transporter Under Zinc Deficiency in Wild Emmer Wheat | [1]Emel Durmaz, [2]Ceyda Coruh, [3]Gizem Dinler, [4]Micheal A. Grusak, [5]Zvika Peleg, [6]Yashua Saranga, [7]Tzion Fahima, [8]Atilla Yazici, [9]Levent Ozturk, [10]Ismail Cakmak, [11]Hikmet Budak [Full author list] | Plant Molecular Biology Reporter [curation] | DOI: 10.1007/S11105-010-0264-3
| wheat [curation] | 2010-10-30 |
| Agrostis | [1]B. S. Ozdemir, [2]Hikmet Budak [Full author list] | | DOI: 10.1007/978-3-642-14255-0_1
| | 2010-09-06 |
| Regulation of barley miRNAs upon dehydration stress correlated with target gene expression | [1]Melda Kantar, [2]Turgay Unver, [3]Hikmet Budak [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-010-0181-4
PubMed: 20676715 | barley [curation] | 2010-07-31 |
| Plant Genetic Resources: Effective Utilization | [1]Hikmet Budak [Full author list] | | DOI: 10.1081/E-EBAF-120042321
| | 2010-07-16 |
| Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces | [1]Frédéric Choulet, [2]Thomas Wicker, [3]Camille Rustenholz, [4]Etienne Paux, [5]Jérome Salse, [6]Philippe Leroy, [7]Stéphane Schlub, [8]Marie-Christine Le Paslier, [9]Ghislaine Magdelenat, [10]Catherine Gonthier, [11]Arnaud Couloux, [12]Hikmet Budak, [13]James Breen, [14]Michael Pumphrey, ... [Full author list] | The Plant Cell [curation] | DOI: 10.1105/TPC.110.074187
PubMed: 20581307 | wheat [curation] | 2010-06-25 |
| A microsatellite marker for yellow rust resistance in wheat | [1]F. Akfirat, [2]Y. Aydin, [3]F. Ertugrul, [4]S. Hasancebi, [5]Hikmet Budak, [6]K. Akan, [7]Z. Mert, [8]N. Bolat, [9]A. Uncuoglu [Full author list] | Cereal Research Communications [curation] | DOI: 10.1556/CRC.38.2010.2.6
| microsatellite [curation]; wheat [curation] | 2010-06-01 |
| Genetic gains for grain yield in high latitude spring wheat grown in Western Siberia in 1900–2008 | [1]A. Morgounov, [2]V. Zykin, [3]I. Belan, [4]L. Roseeva, [5]Yu. Zelenskiy, [6]Hugo Ferney Gomez-Becerra, [7]Hikmet Budak, [8]F. Bekes [Full author list] | Field Crops Research [curation] | DOI: 10.1016/J.FCR.2010.02.001
| Siberia [curation]; wheat [curation] | 2010-05-01 |
| Interspecies and intergenus transferability of barley and wheat D-genome microsatellite markers | [1]A. Castillo, [2]Hikmet Budak, [3]Azahara C Martin, [4]G. Dorado, [5]Andreas Börner, [6]Marion S Röder, [7]P. Hernandez [Full author list] | Annals of Applied Biology [curation] | DOI: 10.1111/J.1744-7348.2010.00391.X
| microsatellite [curation]; wheat [curation]; barley [curation] | 2010-04-20 |
| Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application | [1]Turgay Unver, [2]Mine Bakar, [3]Robert C Shearman, [4]Hikmet Budak [Full author list] | Molecular Genetics and Genomics [curation] | DOI: 10.1007/S00438-010-0526-7
PubMed: 20213187 | Festuca arundinacea [curation]; transcriptome [curation]; glyphosate [curation] | 2010-03-06 |
| Genome sequencing and analysis of the model grass Brachypodium distachyon | [1]John P. Vogel, [2]David F Garvin, [3]Todd C Mockler, [4]Jeremy Schmutz, [5]Dan Rokhsar, [6]Michael Bevan, [7]Kerrie Barry, [8]Susan Lucas, [9]Miranda Harmon-Smith, [10]Kathleen Lail, ..., [168]Thomas Brutnell, [169]Turgay Unver, [170]Hikmet Budak, [171]Harry Belcram, [172]Mathieu Charles, ... [Full author list] | Nature [curation] | DOI: 10.1038/NATURE08747
PubMed: 20148030 | Brachypodium distachyon [curation] | 2010-02-11 |
| Review of current methodological approaches for characterizing microRNAs in plants | [1]Turgay Unver, [2]Deana M Namuth-Covert, [3]Hikmet Budak [Full author list] | International Journal of Plant Genomics [curation] | DOI: 10.1155/2009/262463
PubMed: 19834623 | microRNA [curation] | 2009-10-08 |
| Turfgrass species response exposed to increasing rates of glyphosate application | [1]Y. Senem Su, [2]Levent Ozturk, [3]I. Cakmak, [4]Hikmet Budak [Full author list] | European Journal of Agronomy [curation] | DOI: 10.1016/J.EJA.2009.05.011
| glyphosate [curation] | 2009-10-01 |
| Molecular, morphological, and cytological analysis of diverse Brachypodium distachyon inbred lines. | [1]Ertuğrul Filiz, [2]B S Ozdemir, [3]F Budak, [4]John Vogel, [5]M Tuna, [6]Hikmet Budak [Full author list] | Genome [curation] | DOI: 10.1139/G09-062
PubMed: 19935911 | Brachypodium distachyon [curation] | 2009-10-01 |
| Techniques to study autophagy in plants | [1]Géraldine Mitou, [2]Hikmet Budak, [3]Devrim Gözüaçık [Full author list] | International Journal of Plant Genomics [curation] | DOI: 10.1155/2009/451357
PubMed: 19730746 | autophagy [curation] | 2009-08-27 |
| Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon | [1]John Vogel, [2]Metin Tuna, [3]Hikmet Budak, [4]Naxin Huo, [5]Yong Q Gu, [6]Michael A Steinwand [Full author list] | BMC Plant Biology [curation] | DOI: 10.1186/1471-2229-9-88
PubMed: 19594938 | Brachypodium distachyon [curation] | 2009-07-13 |
| Conserved microRNAs and their targets in model grass species Brachypodium distachyon | [1]Turgay Unver, [2]Hikmet Budak [Full author list] | Planta [curation] | DOI: 10.1007/S00425-009-0974-7
PubMed: 19585143 | microRNA [curation]; Brachypodium distachyon [curation] | 2009-07-08 |
| Genetic variation and environmental stability of grain mineral nutrient concentrations in Triticum dicoccoides under five environments | [1]Hugo Ferney Gomez-Becerra, [2]Atilla Yazici, [3]Levent Ozturk, [4]Hikmet Budak, [5]Zvi Peleg, [6]Alexey Morgounov, [7]Tzion Fahima, [8]Yehoshua Saranga, [9]Ismail Cakmak [Full author list] | Euphytica [curation] | DOI: 10.1007/S10681-009-9987-3
| Triticum [curation]; genetic variation [curation]; Triticum dicoccoides [curation]; environmental stability [curation] | 2009-06-30 |
| Virus-induced gene silencing, a post transcriptional gene silencing method | [1]Turgay Unver, [2]Hikmet Budak [Full author list] | International Journal of Plant Genomics [curation] | DOI: 10.1155/2009/198680
PubMed: 19547658 | gene silencing [curation] | 2009-06-15 |
| Quantitative trait loci conferring grain mineral nutrient concentrations in durum wheat x wild emmer wheat RIL population. | [1]Zvi Peleg, [2]Ismail Cakmak, [3]Levent Ozturk, [4]Atilla Yazici, [5]Yan Jun, [6]Hikmet Budak, [7]Abraham B Korol, [8]Tzion Fahima, [9]Yehoshua Saranga [Full author list] | Theoretical and Applied Genetics [curation] | DOI: 10.1007/S00122-009-1044-Z
PubMed: 19407982 | quantitative trait locus [curation]; wheat [curation] | 2009-04-30 |
| Transcriptome pathways unique to dehydration tolerant relatives of modern wheat | [1]Neslihan Z Ergen, [2]Jyothi Thimmapuram, [3]Hans J Bohnert, [4]Hikmet Budak [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-009-0123-1
PubMed: 19330365 | transcriptome [curation]; wheat [curation] | 2009-03-28 |
| Wet laboratory tools widely used in plant genomics | [1]Hikmet Budak, [2]Hongbin Zhang, [3]Pushpendra K Gupta, [4]Boulos Chalhoub, [5]Andrew James, [6]Chunji Liu [Full author list] | International Journal of Plant Genomics [curation] | DOI: 10.1155/2009/321975
PubMed: 20182638 | plant genomics [curation] | 2009-01-01 |
| Global Expression Patterns of Three Festuca Species Exposed to Different Doses of Glyphosate Using the Affymetrix GeneChip Wheat Genome Array | [1]Ozge Cebeci, [2]Hikmet Budak [Full author list] | Comparative and Functional Genomics [curation] | DOI: 10.1155/2009/505701
PubMed: 20182642 | glyphosate [curation]; wheat [curation] | 2009-01-01 |
| Sequencing over 13 000 expressed sequence tags from six subtractive cDNA libraries of wild and modern wheats following slow drought stress | [1]Neslihan Z Ergen, [2]Hikmet Budak [Full author list] | Plant, Cell and Environment [curation] | DOI: 10.1111/J.1365-3040.2008.01915.X
PubMed: 19054353 | drought [curation]; wheat [curation] | 2008-11-25 |
| Differential expression of wheat transcriptomes in response to varying cadmium concentrations | [1]O. Cebeci, [2]B. Kokturk, [3]N. Ergen, [4]Levent Ozturk, [5]I. Cakmak, [6]Hikmet Budak [Full author list] | Biologia Plantarum [curation] | DOI: 10.1007/S10535-008-0135-Z
| transcriptome [curation]; wheat [curation] | 2008-11-09 |
| Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense | [1]Almudena Castillo, [2]Hikmet Budak, [3]Rajeev Kumar Varshney, [4]Gabriel Dorado, [5]Andreas Graner, [6]Pilar Hernandez [Full author list] | BMC Plant Biology [curation] | DOI: 10.1186/1471-2229-8-97
PubMed: 18822176 | phylogenetics [curation]; Hordeum chilense [curation]; barley [curation] | 2008-09-28 |
| Analysis of expressed sequence tags (ESTs) from Agrostis species obtained using sequence related amplified polymorphism | [1]Gizem Dinler, [2]Hikmet Budak [Full author list] | Biochemical Genetics [curation] | DOI: 10.1007/S10528-008-9181-7
PubMed: 18726683 | | 2008-08-26 |
| Molecular, serological and transmission electron microscopic analysis of the barley yellow dwarf virus-PAVand the cereal yellow dwarf virus-RPV in canary seed (Phalaris canariensisL.) | [1]H. Ilbagi, [2]F. Rabenstein, [3]A. Habekuss, [4]F. Ordon, [5]A. Citir, [6]O. Cebeci, [7]Hikmet Budak [Full author list] | Cereal Research Communications [curation] | DOI: 10.1556/CRC.36.2008.2.3
| G-type main-sequence star [curation]; Cereal yellow dwarf virus-RPV [curation]; barley [curation] | 2008-06-01 |
| Brachypodium genomics | [1]Bahar Sogutmaz Ozdemir, [2]Pilar Hernandez, [3]Ertuğrul Filiz, [4]Hikmet Budak [Full author list] | International Journal of Plant Genomics [curation] | DOI: 10.1155/2008/536104
PubMed: 18309367 | genomics [curation] | 2008-01-01 |
| Organellar genome analysis of rye (Secale cereale) representing diverse geographic regions | [1]Z Isik, [2]I Parmaksiz, [3]C Coruh, [4]Y S Geylan-Su, [5]O Cebeci, [6]B Beecher, [7]Hikmet Budak [Full author list] | Genome [curation] | DOI: 10.1139/G07-052
PubMed: 17893732 | Secale cereale [curation] | 2007-08-01 |
| Identifying, cloning and structural analysis of differentially expressed genes upon Puccinia infection of Festuca rubra var. rubra. | [1]Neslihan Z Ergen, [2]Gizem Dinler, [3]Robert C Shearman, [4]Hikmet Budak [Full author list] | Gene [curation] | DOI: 10.1016/J.GENE.2007.02.005
PubMed: 17566170 | Festuca rubra [curation] | 2007-05-01 |
| Multiple QTL-effects of wheat Gpc-B1 locus on grain protein and micronutrient concentrations | [1]Assaf Distelfeld, [2]Ismail Cakmak, [3]Zvi Peleg, [4]Levent Ozturk, [5]Atilla M. Yazici, [6]Hikmet Budak, [7]Yehoshua Saranga, [8]Tzion Fahima [Full author list] | Physiologia Plantarum [curation] | DOI: 10.1111/J.1399-3054.2006.00841.X
| wheat [curation] | 2007-03-01 |
| Evaluation of seedling characteristics of wheat (Triticum aestivumL.) through canonical correlation analysis | [1]Mustafa Erayman, [2]Bekele Abeyo, [3]P. Baenziger, [4]Hikmet Budak, [5]Kent Eskridge [Full author list] | Cereal Research Communications [curation] | DOI: 10.1556/CRC.34.2006.4.263
| Triticum [curation]; canonical correlation analysis [curation]; wheat [curation] | 2006-12-01 |
| Revealing constitutively expressed resistance genes in Agrostis species using PCR-based motif-directed RNA fingerprinting | [1]Hikmet Budak, [2]Senem Su, [3]Neslihan Ergen [Full author list] | | DOI: 10.1017/S0016672307008518
PubMed: 17371611 | | 2006-12-01 |
| Molecular characterization of cDNA encoding resistance gene-like sequences in Buchloe dactyloides | [1]Hikmet Budak, [2]Zeynep Kasap, [3]Robert C Shearman, [4]Ismail M Dweikat, [5]Ugur Sezerman, [6]Abid Mahmood [Full author list] | Molecular Biotechnology [curation] | DOI: 10.1385/MB:34:3:293
PubMed: 17284777 | Buchloe dactyloides [curation] | 2006-11-01 |
| Understanding ploidy complex and geographic origin of the Buchloe dactyloides genome using cytoplasmic and nuclear marker systems. | [1]Hikmet Budak, [2]R C Shearman, [3]O Gulsen, [4]I Dweikat [Full author list] | Theoretical and Applied Genetics [curation] | DOI: 10.1007/S00122-005-0083-3
PubMed: 16208501 | Buchloe dactyloides [curation] | 2005-11-10 |
| Evolution of Buchloë dactyloides based on cloning and sequencing of matK, rbcL, and cob genes from plastid and mitochondrial genomes. | [1]Hikmet Budak, [2]Robert C Shearman, [3]Ismail M Dweikat [Full author list] | Genome [curation] | DOI: 10.1139/G05-002
PubMed: 16121238 | | 2005-06-01 |
| The use of microsatellite markers for the detection of genetic similarity among winter bread wheat lines for chromosome 3A. | [1]A Mahmood, [2]P S Baenziger, [3]Hikmet Budak, [4]K S Gill, [5]I Dweikat [Full author list] | Theoretical and Applied Genetics [curation] | DOI: 10.1007/S00122-004-1766-X
PubMed: 15290051 | microsatellite [curation]; wheat [curation] | 2004-07-29 |
| Comparative analysis of seeded and vegetative biotype buffalograsses based on phylogenetic relationship using ISSRs, SSRs, RAPDs, and SRAPs | [1]Hikmet Budak, [2]Shearman RC, [3]Parmaksiz I, [4]Dweikat I [Full author list] | Theoretical and Applied Genetics [curation] | DOI: 10.1007/S00122-004-1630-Z
PubMed: 15024466 | phylogenetics [curation] | 2004-03-16 |
| Breeding Pure Line Cultivars | [1]P. Stephen Baenziger, [2]Mustafa Erayman, [3]Hikmet Budak, [4]B. Todd Campbell [Full author list] | | DOI: 10.1081/E-EPCS-120010528
| | 2004-02-27 |
| Molecular characterization of Buffalograss germplasm using sequence-related amplified polymorphism markers | [1]Hikmet Budak, [2]Shearman RC, [3]Parmaksiz I, [4]Gaussoin RE, [5]Riordan TP, [6]Dweikat I [Full author list] | Theoretical and Applied Genetics [curation] | DOI: 10.1007/S00122-003-1428-4
PubMed: 13679978 | | 2003-09-13 |
| Genetic and Environmental Effects on Dough Mixing Characteristics and Agronomic Performance of Diverse Hard Red Winter Wheat Genotypes | [1]Hikmet Budak, [2]P. S. Baenziger, [3]R. A. Graybosch, [4]B. S. Beecher, [5]K. M. Eskridge, [6]M. J. Shipman [Full author list] | Cereal Chemistry [curation] | DOI: 10.1094/CCHEM.2003.80.5.518
| agronomics [curation] | 2003-09-01 |