| Title | Authors (identified) | Published In | Identifier(s) | Topic | Published Date |
|---|
| Diversity analysis of 80,000 wheat accessions reveals consequences and opportunities of selection footprints | [1]Carolina Paola Sansaloni, [2]Jorge Franco, [3]Bruno Santos, [4]Lawrence Percival-Alwyn, [5]Sukhwinder Singh, [6]Cesar Petroli, [7]Jaime Campos, [8]Kate Dreher, [9]Thomas Payne, [10]David F Marshall, [11]Benjamin Kilian, [12]Iain Milne, ... [Full author list] | Nature Communications [curation] | DOI: 10.1038/S41467-020-18404-W
PubMed: 32917907 | | 2020-09-11 |
| BrAPI-an application programming interface for plant breeding applications | [1]Peter Selby, [2]Rafael Abbeloos, [3]Jan Erik Backlund, [4]Martin Basterrechea Salido, [5]Guillaume Bauchet, [6]Omar E Benites-Alfaro, [7]Clay Birkett, [8]Viana C Calaminos, [9]Pierre Carceller, [10]Guillaume Cornut, ..., [24]Pierre Larmande, [25]David S LeBauer, [26]David F Marshall, [27]David S Marshall, [28]Iain Milne, ... [Full author list] | Bioinformatics [curation] | DOI: 10.1093/BIOINFORMATICS/BTZ190
PubMed: 30903186 | application programming interface [curation] | 2019-10-01 |
| RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family | [1]Paul Daly, [2]Christopher McClellan, [3]Marta Maluk, [4]Helena Oakey, [5]Catherine Lapierre, [6]Robbie Waugh, [7]Jennifer Stephens, [8]David F Marshall, [9]Abdellah Barakate, [10]Yukiko Tsuji, [11]Geert Goeminne, [12]Ruben Vanholme, [13]Wout Boerjan, [14]John Ralph, [15]Claire Halpin [Full author list] | Plant Biotechnology Journal [curation] | DOI: 10.1111/PBI.13001
PubMed: 30133138 | | 2018-10-02 |
| An ultra-high density genetic linkage map of perennial ryegrass (Lolium perenne) using genotyping by sequencing (GBS) based on a reference shotgun genome assembly | [1]Janaki Velmurugan, [2]Ewan Mollison, [3]Susanne Barth, [4]David F Marshall, [5]Linda Milne, [6]Christopher J. Creevey, [7]Bridget Lynch, [8]Helena Meally, [9]Matthew McCabe, [10]Dan Milbourne [Full author list] | Annals of Botany [curation] | DOI: 10.1093/AOB/MCW081
PubMed: 27268483 | Lolium perenne [curation] | 2016-06-06 |
| Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings | [1]Iain Milne, [2]Micha Bayer, [3]Gordon Stephen, [4]Linda Cardle, [5]David F Marshall [Full author list] | Methods in Molecular Biology [curation] | DOI: 10.1007/978-1-4939-3167-5_14
PubMed: 26519411 | visualization [curation] | 2016-01-01 |
| Analytical and Decision Support Tools for Genomics-Assisted Breeding | [1]Rajeev Kumar Varshney, [2]Vikas K Singh, [3]John M Hickey, [4]Xu Xun, [5]David F Marshall, [6]Jun Wang, [7]David Edwards, [8]Jean-Marcel Ribaut [Full author list] | Trends in Plant Science [curation] | DOI: 10.1016/J.TPLANTS.2015.10.018
PubMed: 26651919 | decision support system [curation] | 2015-12-02 |
| An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome | [1]Antonio Ribeiro, [2]Agnieszka A. Golicz, [3]Christine Anne Hackett, [4]Iain Milne, [5]Gordon Stephen, [6]David F Marshall, [7]Andrew J Flavell, [8]Micha Bayer [Full author list] | BMC Bioinformatics [curation] | DOI: 10.1186/S12859-015-0801-Z
PubMed: 26558718 | single-nucleotide polymorphism [curation] | 2015-11-11 |
| Evolutionary Dynamics of the Cellulose Synthase Gene Superfamily in Grasses | [1]Julian G Schwerdt, [2]Katrin MacKenzie, [3]Frank Wright, [4]Daniel Oehme, [5]John M Wagner, [6]Andrew John Harvey, [7]Neil Shirley, [8]Rachel A Burton, [9]Miriam Schreiber, [10]Claire Halpin, [11]Jochen Zimmer, [12]David F Marshall, [13]Robbie Waugh, [14]Geoffrey B Fincher [Full author list] | Plant Physiology [curation] | DOI: 10.1104/PP.15.00140
PubMed: 25999407 | cellulose [curation]; Evolutionary dynamics [curation] | 2015-05-21 |
| The low-recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expression | [1]Katie Baker, [2]Micha Bayer, [3]Nicola Cook, [4]Steven Dreißig, [5]Taniya Dhillon, [6]Joanne Russell, [7]Peter Hedley, [8]Jenny Morris, [9]Luke Ramsay, [10]Isabelle Colas, [11]Robbie Waugh, [12]Brian Steffenson, [13]Iain Milne, [14]Gordon Stephen, [15]David F Marshall, [16]Andrew J Flavell [Full author list] | The Plant Journal [curation] | DOI: 10.1111/TPJ.12600
PubMed: 24947331 | barley [curation] | 2014-08-05 |
| Helium: visualization of large scale plant pedigrees | [1]Paul D Shaw, [2]Martin Graham, [3]Jessie Kennedy, [4]Iain Milne, [5]David F Marshall [Full author list] | BMC Bioinformatics [curation] | DOI: 10.1186/1471-2105-15-259
PubMed: 25085009 | visualization [curation] | 2014-08-01 |
| The barley genome sequence assembly reveals three additional members of the CslF (1,3;1,4)-β-glucan synthase gene family | [1]Miriam Schreiber, [2]Frank Wright, [3]Katrin MacKenzie, [4]Peter Hedley, [5]Julian G Schwerdt, [6]Alan Little, [7]Rachel A Burton, [8]Geoffrey B Fincher, [9]David F Marshall, [10]Robbie Waugh, [11]Claire Halpin [Full author list] | PLOS One [curation] | DOI: 10.1371/JOURNAL.PONE.0090888
PubMed: 24595438 | barley [curation] | 2014-03-03 |
| Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps | [1]Sanjeev Kumar Sharma, [2]Dan Bolser, [3]Jan de Boer, [4]Mads Sønderkær, [5]Walter Amoros, [6]Martin Federico Carboni, [7]Juan Martín D'Ambrosio, [8]German de la Cruz, [9]Alex Di Genova, [10]David S Douches, ..., [18]Roberto Lozano, [19]Alejandro Maass, [20]David F Marshall, [21]Diana Martinez, [22]Karen McLean, ... [Full author list] | G3 [curation] | DOI: 10.1534/G3.113.007153
PubMed: 24062527 | | 2013-11-06 |
| Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley. | [1]Jordi Comadran, [2]Benjamin Kilian, [3]Joanne Russell, [4]Luke Ramsay, [5]Nils Stein, [6]Martin Ganal, [7]Paul Shaw, [8]Micha Bayer, [9]William Thomas, [10]David F Marshall, [11]Pete Hedley, [12]Alessandro Tondelli, [13]Nicola Pecchioni, [14]Enrico Francia, [15]Viktor Korzun, [16]Alexander Walther, [17]Robbie Waugh [Full author list] | Nature Genetics [curation] | DOI: 10.1038/NG.2447
PubMed: 23160098 | barley [curation] | 2012-11-18 |
| A physical, genetic and functional sequence assembly of the barley genome | [1]Klaus Mayer, [2]Robbie Waugh, [3]Peter Langridge, [4]Timothy J Close, [5]Roger P. Wise, [6]Andreas Graner, [7]Takashi Matsumoto, [8]Kazuhiro Sato, [9]Alan H. Schulman, [10]Gary Muehlbauer, ..., [98]Joanne Russell, [99]Arnis Druka, [100]David F Marshall, [101]Micha Bayer, [102]David Swarbreck, ... [Full author list] | Nature [curation] | DOI: 10.1038/NATURE11543
PubMed: 23075845 | barley [curation] | 2012-10-17 |
| Using Tablet for visual exploration of second-generation sequencing data | [1]Iain Milne, [2]Gordon Stephen, [3]Micha Bayer, [4]Peter J Cock, [5]Leighton Pritchard, [6]Linda Cardle, [7]Paul D Shaw, [8]David F Marshall [Full author list] | Briefings in Bioinformatics [curation] | DOI: 10.1093/BIB/BBS012
PubMed: 22445902 | | 2012-03-24 |
| Syringyl lignin is unaltered by severe sinapyl alcohol dehydrogenase suppression in tobacco | [1]Abdellah Barakate, [2]Jennifer Stephens, [3]Alison Goldie, [4]William Nigel Hunter, [5]David F Marshall, [6]Robert D. Hancock, [7]Catherine Lapierre, [8]Kris Morreel, [9]Wout Boerjan, [10]Claire Halpin [Full author list] | The Plant Cell [curation] | DOI: 10.1105/TPC.111.089037
PubMed: 22158465 | lignin [curation] | 2011-12-09 |
| A robust statistical method for association-based eQTL analysis | [1]Ning Jiang, [2]Minghui Wang, [3]Tianye Jia, [4]Lin Wang, [5]Lindsey Leach, [6]Christine Hackett, [7]David F Marshall, [8]Zewei Luo [Full author list] | PLOS One [curation] | DOI: 10.1371/JOURNAL.PONE.0023192
PubMed: 21858027 | statistics [curation] | 2011-08-09 |
| Genome sequence and analysis of the tuber crop potato | [1]Potato Genome Sequencing Consortium, [2]Xun Xu, [10]Ruiqiang Li, ..., [3]Shengkai Pan, [4]Shifeng Cheng, [5]Bo Zhang, [6]D Mu, [7]Peixiang Ni, [8]Gengyun Zhang, [9]Shuang Yang, ..., [73]C Robin Buell, [74]Sanjeev Kumar Sharma, [75]David F Marshall, [76]Robbie Waugh, [77]Glenn J Bryan, ... [Full author list] | Nature [curation] | DOI: 10.1038/NATURE10158
PubMed: 21743474 | | 2011-07-10 |
| Comparative visualization of genetic and physical maps with Strudel | [1]Micha Bayer, [2]Iain Milne, [3]Gordon Stephen, [4]Paul Shaw, [5]Linda Cardle, [6]Frank Wright, [7]David F Marshall [Full author list] | Bioinformatics [curation] | DOI: 10.1093/BIOINFORMATICS/BTR111
PubMed: 21372085 | visualization [curation] | 2011-03-03 |
| INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1. | [1]Luke Ramsay, [2]Jordi Comadran, [3]Arnis Druka, [4]David F Marshall, [5]William T B Thomas, [6]Malcolm Macaulay, [7]Katrin MacKenzie, [8]Craig Simpson, [9]John Fuller, [10]Nicola Bonar, [11]Patrick M Hayes, [12]Udda Lundqvist, [13]Jerome D Franckowiak, [14]Timothy J Close, [15]Gary Muehlbauer, [16]Robbie Waugh [Full author list] | Nature Genetics [curation] | DOI: 10.1038/NG.745
PubMed: 21217754 | domestication [curation]; barley [curation] | 2011-01-09 |
| Flapjack--graphical genotype visualization | [1]Iain Milne, [2]Paul Shaw, [3]Gordon Stephen, [4]Micha Bayer, [5]Linda Cardle, [6]William T B Thomas, [7]Andrew J Flavell, [8]David F Marshall [Full author list] | Bioinformatics [curation] | DOI: 10.1093/BIOINFORMATICS/BTQ580
PubMed: 20956241 | visualization [curation] | 2010-10-18 |
| Exploiting induced variation to dissect quantitative traits in barley | [1]Arnis Druka, [2]Jerome Franckowiak, [3]Udda Lundqvist, [4]Nicola Bonar, [5]Jill Alexander, [6]Justyna Guzy-Wrobelska, [7]Luke Ramsay, [8]Ilze Druka, [9]Iain Grant, [10]Malcolm Macaulay, [11]Vera Vendramin, [12]Fahimeh Shahinnia, [13]Slobodanka Radovic, [14]Kelly Houston, [15]David Harrap, [16]Linda Cardle, [17]David F Marshall, [18]Michele Morgante, [19]Nils Stein, [20]Robbie Waugh [Full author list] | Biochemical Society Transactions [curation] | DOI: 10.1042/BST0380683
PubMed: 20298243 | barley [curation]; quantitative trait [curation] | 2010-04-01 |
| Development and implementation of high-throughput SNP genotyping in barley | [1]Timothy J Close, [2]Prasanna R Bhat, [3]Stefano Lonardi, [4]Yonghui Wu, [5]Nils Rostoks, [6]Luke Ramsay, [7]Arnis Druka, [8]Nils Stein, [9]Jan T Svensson, [10]Steve Wanamaker, ..., [21]Gary Muehlbauer, [22]Joseph DeYoung, [23]David F Marshall, [24]Kavitha Madishetty, [25]Raymond D Fenton, ... [Full author list] | BMC Genomics [curation] | DOI: 10.1186/1471-2164-10-582
PubMed: 19961604 | barley [curation] | 2009-12-04 |
| TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops | [1]Iain Milne, [2]Dominik Lindner, [3]Micha Bayer, [4]Dirk Husmeier, [5]Gráinne McGuire, [6]David F Marshall, [7]Frank Wright [Full author list] | Bioinformatics [curation] | DOI: 10.1093/BIOINFORMATICS/BTN575
PubMed: 18984599 | | 2008-11-04 |
| The 172-kb genomic DNA region of the O. rufipogon yld1.1 locus: comparative sequence analysis with O. sativa ssp. japonica and O. sativa ssp. indica | [1]Beng-Kah Song, [2]Ingo Hein, [3]Arnis Druka, [4]Robbie Waugh, [5]David F Marshall, [6]Kalaivani Nadarajah, [7]Soon-Joo Yap, [8]Wickneswari Ratnam [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-008-0091-X
PubMed: 18633654 | | 2008-07-17 |
| Intronic noncoding RNAs and splicing | [1]John W S Brown, [2]David F Marshall, [3]Manuel Echeverria [Full author list] | Trends in Plant Science [curation] | DOI: 10.1016/J.TPLANTS.2008.04.010
PubMed: 18555733 | | 2008-06-12 |
| Exploiting regulatory variation to identify genes underlying quantitative resistance to the wheat stem rust pathogen Puccinia graminis f. sp. tritici in barley | [1]Arnis Druka, [2]Elena Potokina, [3]Zewei Luo, [4]Nicola Bonar, [5]Ilze Druka, [6]Ling Zhang, [7]David F Marshall, [8]Brian Steffenson, [9]Timothy J Close, [10]Roger Wise, [11]Andris Kleinhofs, [12]Robert W. Williams, [13]Michael J Kearsey, [14]Robbie Waugh [Full author list] | Theoretical and Applied Genetics [curation] | DOI: 10.1007/S00122-008-0771-X
PubMed: 18542913 | Puccinia graminis [curation]; wheat [curation]; barley [curation] | 2008-04-30 |
| Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork | [1]Arnis Druka, [2]Ilze Druka, [3]Arthur G Centeno, [4]Hongqiang Li, [5]Zhaohui Sun, [6]William T B Thomas, [7]Nicola Bonar, [8]Brian Steffenson, [9]Steven E Ullrich, [10]Andris Kleinhofs, [11]Roger Wise, [12]Timothy J Close, [13]Elena Potokina, [14]Zewei Luo, [15]Carola Wagner, [16]Günther F Schweizer, [17]David F Marshall, [18]Michael J Kearsey, [19]Robert W. Williams, [20]Robbie Waugh [Full author list] | BMC Genetics [curation] | DOI: 10.1186/1471-2156-9-73
PubMed: 19017390 | barley [curation] | 2008-01-01 |
| The generation challenge programme platform: semantic standards and workbench for crop science | [1]Richard Bruskiewich, [2]Martin Senger, [3]Guy Davenport, [4]Manuel Ruiz, [5]Mathieu Rouard, [6]Tom Hazekamp, [7]Masaru Takeya, [8]Koji Doi, [9]Kouji Satoh, [10]Marcos Costa, ..., [50]James Wagner, [51]Jane Morris, [52]David F Marshall, [53]Anthony Collins, [54]Shoshi Kikuchi, ... [Full author list] | International Journal of Plant Genomics [curation] | DOI: 10.1155/2008/369601
PubMed: 18483570 | | 2008-01-01 |
| An atlas of gene expression from seed to seed through barley development | [1]Arnis Druka, [2]Gary Muehlbauer, [3]Ilze Druka, [4]Rico Caldo, [5]Ute Baumann, [6]Nils Rostoks, [7]Andreas Schreiber, [8]Roger Wise, [9]Timothy Close, [10]Andris Kleinhofs, [11]Andreas Graner, [12]Alan H. Schulman, [13]Peter Langridge, [14]Kazuhiro Sato, [15]Patrick Hayes, [16]Jim McNicol, [17]David F Marshall, [18]Robbie Waugh [Full author list] | Functional and Integrative Genomics [curation] | DOI: 10.1007/S10142-006-0025-4
PubMed: 16547597 | barley [curation] | 2006-03-18 |
| Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress | [1]Nils Rostoks, [2]Sharon Mudie, [3]Linda Cardle, [4]Joanne Russell, [5]Luke Ramsay, [6]Allan Booth, [7]Jan T Svensson, [8]Steve I Wanamaker, [9]Harkamal Walia, [10]Edmundo M Rodriguez, [11]Peter Hedley, [12]Hui Liu, [13]Jenny Morris, [14]Timothy J Close, [15]David F Marshall, [16]Robbie Waugh [Full author list] | Molecular Genetics and Genomics [curation] | DOI: 10.1007/S00438-005-0046-Z
PubMed: 16244872 | | 2005-10-22 |
| Single-feature polymorphism discovery in the barley transcriptome | [1]Nils Rostoks, [2]Justin O. Borevitz, [3]Peter Hedley, [4]Joanne Russell, [5]Sharon Mudie, [6]Jenny Morris, [7]Linda Cardle, [8]David F Marshall, [9]Robbie Waugh [Full author list] | Genome Biology [curation] | DOI: 10.1186/GB-2005-6-6-R54
PubMed: 15960806 | transcriptome [curation]; barley [curation] | 2005-05-11 |
| Latent S alleles are widespread in cultivated self-compatible Brassica napus | [1]U U Ekuere, [2]I A P Parkin, [3]C Bowman, [4]David F Marshall, [5]D J Lydiate [Full author list] | Genome [curation] | DOI: 10.1139/G03-120
PubMed: 15060578 | rapeseed [curation] | 2004-04-01 |
| Changes in gene expression during meristem activation processes in Solanum tuberosum with a focus on the regulation of an auxin response factor gene | [1]Odile Faivre-Rampant, [2]Linda Cardle, [3]David F Marshall, [4]Roberto Viola, [5]Mark A Taylor [Full author list] | Journal of Experimental Botany [curation] | DOI: 10.1093/JXB/ERH075
PubMed: 14966214 | potato [curation] | 2004-02-13 |
| Analysis of Arabidopsis genome sequence reveals a large new gene family in plants | [1]J P Ride, [2]E M Davies, [3]F. Chris H. Franklin, [4]David F Marshall [Full author list] | Plant Molecular Biology [curation] | DOI: 10.1023/A:1006178511787
PubMed: 10344198 | | 1999-03-01 |
| Construction of a RFLP genetic linkage map for oil palm (Elaeis guineensis Jacq.). | [1]S Mayes, [2]P L Jack, [3]R H Corley, [4]David F Marshall [Full author list] | Genome [curation] | DOI: 10.1139/G97-016
PubMed: 18464812 | Elaeis guineensis [curation] | 1997-02-01 |
| Towards developing intervarietal substitution lines in Brassica napus using marker-assisted selection | [1]P M Howell, [2]D J Lydiate, [3]David F Marshall [Full author list] | Genome [curation] | DOI: 10.1139/G96-045
PubMed: 18469898 | rapeseed [curation] | 1996-04-01 |
| Higher recombination frequencies in female compared to male meisoses in Brassica oleracea | [1]M J Kearsey, [2]L D Ramsay, [3]D E Jennings, [4]D J Lydiate, [5]E J Bohuon, [6]David F Marshall [Full author list] | Theoretical and Applied Genetics [curation] | DOI: 10.1007/BF00223680
PubMed: 24166258 | Brassica oleracea [curation] | 1996-03-01 |