| Title | Authors (identified) | Published In | Identifier(s) | Topic | Published Date |
|---|
| The tepary bean genome provides insight into evolution and domestication under heat stress | [1]Samira Mafi Moghaddam, [2]Atena Oladzad, [3]Chushin Koh, [4]Larissa Ramsay, [5]John P Hart, [6]Sujan Mamidi, [7]Genevieve Hoopes, [8]Avinash Sreedasyam, [9]Andrew Wiersma, [10]Dongyan Zhao, [11]Jane Grimwood, [12]John P Hamilton, [13]Jerry Jenkins, [14]Brieanne Vaillancourt, ... [Full author list] | Nature Communications [curation] | DOI: 10.1038/S41467-021-22858-X
PubMed: 33976152 | | 2021-05-11 |
| Haplotype-resolved genome analyses of a heterozygous diploid potato | [1]Qian Zhou, [2]Dié Tang, [3]Wu Huang, [4]Zhongmin Yang, [5]Yu Zhang, [6]John P Hamilton, [7]Richard G F Visser, [8]Christian Bachem, [9]C Robin Buell, [10]Zhonghua Zhang, [11]Chunzhi Zhang, [12]Sanwen Huang [Full author list] | Nature Genetics [curation] | DOI: 10.1038/S41588-020-0699-X
PubMed: 32989320 | heterozygosity [curation] | 2020-09-28 |
| The evolutionary origins of the cat attractant nepetalactone in catnip | [1]Benjamin R. Lichman, [2]Grant T Godden, [3]John P Hamilton, [4]Lira Palmer, [5]Mohamed Omar Kamileen, [6]Dongyan Zhao, [7]Brieanne Vaillancourt, [8]Joshua C Wood, [9]Miao Sun, [10]Taliesin J Kinser, [11]Laura Henry, [12]Carlos Rodriguez-Lopez, [13]Natalia Dudareva, [14]Douglas E. Soltis, [15]Pamela S. Soltis, [16]C Robin Buell, [17]Sarah E. O'Connor [Full author list] | Science Advances [curation] | DOI: 10.1126/SCIADV.ABA0721
PubMed: 32426505 | Nepeta cataria [curation]; (+)-(4as,7S,7ar)-nepetalactone [curation] | 2020-05-13 |
| Gene Discovery in Gelsemium Highlights Conserved Gene Clusters in Monoterpene Indole Alkaloid Biosynthesis | [1]Jakob Franke, [2]Jeongwoon Kim, [3]John P Hamilton, [4]Dongyan Zhao, [5]Gina M. Pham, [6]Krystle Wiegert-Rininger, [7]Emily Crisovan, [8]Linsey Newton, [9]Brieanne Vaillancourt, [10]Evangelos Tatsis, [11]C. Robin Buell, [12]Sarah E. O'Connor [Full author list] | ChemBioChem [curation] | DOI: 10.1002/CBIC.201800592
| | 2018-11-13 |
| Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement | [1]Shan Wu, [2]Kin H Lau, [3]Qinghe Cao, [4]John P Hamilton, [5]Honghe Sun, [6]Chenxi Zhou, [7]Lauren A Eserman, [8]Dorcus C Gemenet, [9]Bode A Olukolu, [10]Haiyan Wang, ... [Full author list] | Nature Communications [curation] | DOI: 10.1038/S41467-018-06983-8
PubMed: 30389915 | general chemistry [curation] | 2018-11-02 |
| Reply to Huang et al.: Avoiding "one-size-fits-all" approaches to variant discovery | [1]Michael A Hardigan, [2]F Parker E Laimbeer, [3]John P Hamilton, [4]Brieanne Vaillancourt, [5]David S Douches, [6]Eva M Farré, [7]Richard E Veilleux, [8]C Robin Buell [Full author list] | Proceedings of the National Academy of Sciences of the United States of America [curation] | DOI: 10.1073/PNAS.1807622115
PubMed: 29934402 | | 2018-06-22 |
| Genome sequence of M6, a diploid inbred clone of the high-glycoalkaloid-producing tuber-bearing potato species Solanum chacoense, reveals residual heterozygosity | [1]Courtney P Leisner, [2]John P Hamilton, [3]Emily Crisovan, [4]Norma C Manrique-Carpintero, [5]Alexandre P Marand, [6]Linsey Newton, [7]Gina M Pham, [8]Jiming Jiang, [9]David S Douches, [10]Shelley H Jansky, [11]C Robin Buell [Full author list] | The Plant Journal [curation] | DOI: 10.1111/TPJ.13857
PubMed: 29405524 | Solanum chacoense [curation]; heterozygosity [curation] | 2018-03-22 |
| The unique epigenetic features of Pack-MULEs and their impact on chromosomal base composition and expression spectrum. | [1]Dongyan Zhao, [2]John P Hamilton, [3]Brieanne Vaillancourt, [4]Wenli Zhang, [5]Georgia C Eizenga, [6]Yuehua Cui, [7]Jiming Jiang, [8]C Robin Buell, [9]Ning Jiang [Full author list] | Nucleic Acids Research [curation] | DOI: 10.1093/NAR/GKY025
PubMed: 29365184 | | 2018-03-01 |
| Genome Assembly and Annotation of the Medicinal Plant Calotropis gigantea, a Producer of Anti-Cancer and Anti-Malarial Cardenolides | [1]Genevieve M Hoopes, [2]John P Hamilton, [3]Jeongwoon Kim, [4]Dongyan Zhao, [5]Krystle Wiegert-Rininger, [6]Emily Crisovan, [7]C Robin Buell [Full author list] | G3 [curation] | DOI: 10.1534/G3.117.300331
PubMed: 29237703 | malaria [curation]; medicinal plant [curation]; Calotropis gigantea [curation] | 2018-02-02 |
| Genome diversity of tuber-bearing Solanum uncovers complex evolutionary history and targets of domestication in the cultivated potato | [1]Michael A Hardigan, [2]F Parker E Laimbeer, [3]Linsey Newton, [4]Emily Crisovan, [5]John P Hamilton, [6]Brieanne Vaillancourt, [7]Krystle Wiegert-Rininger, [8]Joshua C Wood, [9]David S Douches, [10]Eva M Farré, [11]Richard E Veilleux, [12]C Robin Buell [Full author list] | Proceedings of the National Academy of Sciences of the United States of America [curation] | DOI: 10.1073/PNAS.1714380114
PubMed: 29087343 | domestication [curation] | 2017-10-30 |
| Novel Loci Underlie Natural Variation in Vitamin E Levels in Maize Grain | [1]Christine H Diepenbrock, [2]Catherine B Kandianis, [3]Alexander E Lipka, [4]Maria Magallanes-Lundback, [5]Brieanne Vaillancourt, [6]Elsa Góngora-Castillo, [7]Jason G Wallace, [8]Jason Cepela, [9]Alex Mesberg, [10]Peter J Bradbury, [11]Daniel Ilut, [12]Maria Mateos-Hernandez, [13]John P Hamilton, [14]Brenda F Owens, [15]Tyler Tiede, [16]Edward Buckler, [17]Torbert Rocheford, [18]C Robin Buell, [19]Michael A Gore, [20]Dean DellaPenna [Full author list] | The Plant Cell [curation] | DOI: 10.1105/TPC.17.00475
PubMed: 28970338 | vitamin [curation] | 2017-10-02 |
| De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin | [1]Dongyan Zhao, [2]John P Hamilton, [3]Gina M Pham, [4]Emily Crisovan, [5]Krystle Wiegert-Rininger, [6]Brieanne Vaillancourt, [7]Dean DellaPenna, [8]C Robin Buell [Full author list] | GigaScience [curation] | DOI: 10.1093/GIGASCIENCE/GIX065
PubMed: 28922823 | Camptotheca acuminata [curation] | 2017-09-01 |
| Characterization of the Xanthomonas translucens Complex Using Draft Genomes, Comparative Genomics, Phylogenetic Analysis, and Diagnostic LAMP Assays | [1]Paul A Langlois, [2]Jacob Snelling, [3]John P Hamilton, [4]Claude Bragard, [5]Ralf Koebnik, [6]Valérie Verdier, [7]Lindsay R Triplett, [8]Jochen Blom, [9]Ned A Tisserat, [10]Jan E Leach [Full author list] | Phytopathology [curation] | DOI: 10.1094/PHYTO-08-16-0286-R
PubMed: 28112596 | phylogenetics [curation]; comparative genomics [curation]; Xanthomonas translucens [curation] | 2017-01-23 |
| Analysis of Ribosome-Associated mRNAs in Rice Reveals the Importance of Transcript Size and GC Content in Translation | [1]Dongyan Zhao, [2]John P Hamilton, [3]Michael Hardigan, [4]Dongmei Yin, [5]Tao He, [6]Brieanne Vaillancourt, [7]Mauricio Alberto Reynoso, [8]Germain Pauluzzi, [9]Scott Funkhouser, [10]Yuehua Cui, [11]Julia Bailey-Serres, [12]Jiming Jiang, [13]C Robin Buell, [14]Ning Jiang [Full author list] | G3 [curation] | DOI: 10.1534/G3.116.036020
PubMed: 27852012 | | 2016-11-14 |
| Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing | [1]James A Stapleton, [2]Jeongwoon Kim, [3]John P Hamilton, [4]Ming Wu, [5]Luiz C Irber, [6]Rohan Maddamsetti, [7]Bryan Briney, [8]Linsey Newton, [9]Dennis R. Burton, [10]C. Titus Brown, [11]Christina Chan, [12]C Robin Buell, [13]Timothy A Whitehead [Full author list] | PLOS One [curation] | DOI: 10.1371/JOURNAL.PONE.0147229
PubMed: 26789840 | | 2016-01-20 |
| Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum | [1]Michael A Hardigan, [2]Emily Crisovan, [3]John P Hamilton, [4]Jeongwoon Kim, [5]Parker Laimbeer, [6]Courtney P Leisner, [7]Norma C Manrique-Carpintero, [8]Linsey Newton, [9]Gina M Pham, [10]Brieanne Vaillancourt, [11]Xueming Yang, [12]Zixian Zeng, [13]David S Douches, [14]Jiming Jiang, [15]Richard E Veilleux, [16]C Robin Buell [Full author list] | The Plant Cell [curation] | DOI: 10.1105/TPC.15.00538
PubMed: 26772996 | potato [curation] | 2016-01-15 |
| Genome-guided investigation of plant natural product biosynthesis | [1]Franziska Kellner, [2]Jeongwoon Kim, [3]Bernardo J. Clavijo, [4]John P Hamilton, [5]Kevin L. Childs, [6]Brieanne Vaillancourt, [7]Jason Cepela, [8]Marc Habermann, [9]Burkhard Steuernagel, [10]Leah Clissold, [11]Kirsten McLay, [12]Carol Robin Buell, [13]Sarah E. O'Connor [Full author list] | The Plant Journal [curation] | DOI: 10.1111/TPJ.12827
PubMed: 25759247 | natural product [curation] | 2015-04-11 |
| Gene amplification of 5-enol-pyruvylshikimate-3-phosphate synthase in glyphosate-resistant Kochia scoparia | [1]Andrew T Wiersma, [2]Todd A Gaines, [3]Christopher Preston, [4]John P Hamilton, [5]Darci Giacomini, [6]C Robin Buell, [7]Jan E Leach, [8]Philip Westra [Full author list] | Planta [curation] | DOI: 10.1007/S00425-014-2197-9
PubMed: 25366557 | glyphosate [curation]; Kochia scoparia [curation] | 2014-11-05 |
| A root-expressed L-phenylalanine:4-hydroxyphenylpyruvate aminotransferase is required for tropane alkaloid biosynthesis in Atropa belladonna | [1]Matthew A Bedewitz, [2]Elsa Góngora-Castillo, [3]Joseph B Uebler, [4]Eliana Gonzales-Vigil, [5]Krystle E Wiegert-Rininger, [6]Kevin L. Childs, [7]John P Hamilton, [8]Brieanne Vaillancourt, [9]Yun-Soo Yeo, [10]Joseph Chappell, [11]Dean DellaPenna, [12]A. Daniel Jones, [13]C Robin Buell, [14]Cornelius S. Barry [Full author list] | The Plant Cell [curation] | DOI: 10.1105/TPC.114.130534
PubMed: 25228340 | Atropa belladonna [curation] | 2014-09-16 |
| Comparative analysis of two emerging rice seed bacterial pathogens | [0]Carolina Ballén-Taborda, [1]P A Fory, [2]L Triplett, [3]C Ballen, [4]J F Abello, [5]J Duitama, [6]M G Aricapa, [7]G A Prado, [8]F Correa, [9]John P Hamilton, [10]J E Leach, [11]J Tohme, [12]G M Mosquera [Full author list] | Phytopathology [curation] | DOI: 10.1094/PHYTO-07-13-0186-R
PubMed: 24261408 | | 2014-05-01 |
| Timber! Felling the loblolly pine genome | [1]John P Hamilton, [2]C Robin Buell [Full author list] | Genome Biology [curation] | DOI: 10.1186/GB4170
PubMed: 25000971 | | 2014-03-31 |
| Spud DB: A Resource for Mining Sequences, Genotypes, and Phenotypes to Accelerate Potato Breeding | [1]Cory D. Hirsch, [2]John P Hamilton, [3]Kevin L. Childs, [4]Jason Cepela, [5]Emily Crisovan, [6]Brieanne Vaillancourt, [7]Candice N. Hirsch, [8]Marc Habermann, [9]Brayden Neal, [10]C. Robin Buell [Full author list] | The plant genome [curation] | DOI: 10.3835/PLANTGENOME2013.12.0042
| | 2014-01-01 |
| Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps | [1]Sanjeev Kumar Sharma, [2]Dan Bolser, [3]Jan de Boer, [4]Mads Sønderkær, [5]Walter Amoros, [6]Martin Federico Carboni, [7]Juan Martín D'Ambrosio, [8]German de la Cruz, [9]Alex Di Genova, [10]David S Douches, ..., [13]Frank Guzman, [14]Christine A Hackett, [15]John P Hamilton, [16]Guangcun Li, [17]Ying Li, ... [Full author list] | G3 [curation] | DOI: 10.1534/G3.113.007153
PubMed: 24062527 | | 2013-11-06 |
| Comparative genomics reveals insight into virulence strategies of plant pathogenic oomycetes | [1]Bishwo N Adhikari, [2]John P Hamilton, [3]Marcelo M Zerillo, [4]Ned Tisserat, [5]C André Lévesque, [6]C Robin Buell [Full author list] | PLOS One [curation] | DOI: 10.1371/JOURNAL.PONE.0075072
PubMed: 24124466 | comparative genomics [curation] | 2013-10-04 |
| Carbohydrate-active enzymes in pythium and their role in plant cell wall and storage polysaccharide degradation | [1]Marcelo M Zerillo, [2]Bishwo N Adhikari, [3]John P Hamilton, [4]C Robin Buell, [5]C André Lévesque, [6]Ned Tisserat [Full author list] | PLOS One [curation] | DOI: 10.1371/JOURNAL.PONE.0072572
PubMed: 24069150 | cell wall [curation]; polysaccharide [curation] | 2013-09-12 |
| Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data | [1]Yoshihiro Kawahara, [2]Melissa de la Bastide, [3]John P Hamilton, [4]Hiroyuki Kanamori, [5]W. Richard McCombie, [6]Shu Ouyang, [7]David C Schwartz, [8]Tsuyoshi Tanaka, [9]Jianzhong Wu, [10]Shiguo Zhou, ... [Full author list] | Rice [curation] | DOI: 10.1186/1939-8433-6-4
PubMed: 24280374 | Oryza sativa [curation] | 2013-02-06 |
| Development of a large SNP genotyping array and generation of high-density genetic maps in tomato | [1]Sung-Chur Sim, [2]Gregor Durstewitz, [3]Jörg Plieske, [4]Ralf Wieseke, [5]Martin W Ganal, [6]Allen Van Deynze, [7]John P Hamilton, [8]C Robin Buell, [9]Mathilde Causse, [10]Saranga Wijeratne, [11]David M Francis [Full author list] | PLOS One [curation] | DOI: 10.1371/JOURNAL.PONE.0040563
PubMed: 22802968 | genotyping [curation] | 2012-07-10 |
| Integration of two diploid potato linkage maps with the potato genome sequence | [1]Kimberly J Felcher, [2]Joseph J Coombs, [3]Alicia N Massa, [4]Candice N Hansey, [5]John P Hamilton, [6]Richard E Veilleux, [7]C Robin Buell, [8]David S Douches [Full author list] | PLOS One [curation] | DOI: 10.1371/JOURNAL.PONE.0036347
PubMed: 22558443 | | 2012-04-27 |
| Expression profiling of Cucumis sativus in response to infection by Pseudoperonospora cubensis | [1]Bishwo N Adhikari, [2]Elizabeth Savory, [3]Brieanne Vaillancourt, [4]Kevin L. Childs, [5]John P Hamilton, [6]Brad Day, [7]C Robin Buell [Full author list] | PLOS One [curation] | DOI: 10.1371/JOURNAL.PONE.0034954
PubMed: 22545095 | Cucumis sativus [curation] | 2012-04-24 |
| mRNA-Seq analysis of the Pseudoperonospora cubensis transcriptome during cucumber (Cucumis sativus L.) infection | [1]Elizabeth Savory, [2]Bishwo N Adhikari, [3]John P Hamilton, [4]Brieanne Vaillancourt, [5]C Robin Buell, [6]Brad Day [Full author list] | PLOS One [curation] | DOI: 10.1371/JOURNAL.PONE.0035796
PubMed: 22545137 | Cucumis sativus [curation]; transcriptome [curation] | 2012-04-24 |
| Advances in plant genome sequencing | [1]John P Hamilton, [2]C Robin Buell [Full author list] | The Plant Journal [curation] | DOI: 10.1111/J.1365-313X.2012.04894.X
PubMed: 22449051 | whole genome sequencing [curation] | 2012-04-01 |
| Alternative splicing of a multi-drug transporter from Pseudoperonospora cubensis generates an RXLR effector protein that elicits a rapid cell death | [1]Elizabeth Savory, [2]Cheng Zou, [3]Bishwo N Adhikari, [4]John P Hamilton, [5]C Robin Buell, [6]Shin-Han Shiu, [7]Brad Day [Full author list] | PLOS One [curation] | DOI: 10.1371/JOURNAL.PONE.0034701
PubMed: 22496844 | cell death [curation]; alternative mRNA splicing, via spliceosome [curation] | 2012-01-01 |
| Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species | [1]Elsa Góngora-Castillo, [2]Kevin L. Childs, [3]Greg Fedewa, [4]John P Hamilton, [5]David K Liscombe, [6]Maria Magallanes-Lundback, [7]Kranthi K. Mandadi, [8]Ezekiel Nims, [9]Weerawat Runguphan, [10]Brieanne Vaillancourt, [11]Marina Varbanova-Herde, [12]Dean DellaPenna, [13]Thomas D McKnight, [14]Sarah E. O'Connor, [15]C Robin Buell [Full author list] | PLOS One [curation] | DOI: 10.1371/JOURNAL.PONE.0052506
PubMed: 23300689 | medicinal plant [curation]; transcriptome [curation] | 2012-01-01 |
| Single Nucleotide Polymorphism Discovery in Cultivated Tomato via Sequencing by Synthesis | [1]John P Hamilton, [2]Sung-Chur Sim, [3]Kevin Stoffel, [4]Allen Van Deynze, [5]C. Robin Buell, [6]David M. Francis [Full author list] | The plant genome [curation] | DOI: 10.3835/PLANTGENOME2011.12.0033
| single-nucleotide polymorphism [curation] | 2012-01-01 |
| The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes | [1]John P Hamilton, [2]Eric C Neeno-Eckwall, [3]Bishwo N Adhikari, [4]Nicole T Perna, [5]Ned Tisserat, [6]Jan E Leach, [7]C André Lévesque, [8]C Robin Buell [Full author list] | Database [curation] | DOI: 10.1093/DATABASE/BAR053
PubMed: 22120664 | genomics [curation] | 2011-11-26 |
| Single nucleotide polymorphism discovery in elite North American potato germplasm | [1]John P Hamilton, [2]Candice N Hansey, [3]Brett R. Whitty, [4]Kevin Stoffel, [5]Alicia N Massa, [6]Allen Van Deynze, [7]Walter S De Jong, [8]David S Douches, [9]C Robin Buell [Full author list] | BMC Genomics [curation] | DOI: 10.1186/1471-2164-12-302
PubMed: 21658273 | single-nucleotide polymorphism [curation] | 2011-06-09 |
| A stereoselective hydroxylation step of alkaloid biosynthesis by a unique cytochrome P450 in Catharanthus roseus | [1]Lesley-Ann Giddings, [2]David K Liscombe, [3]John P Hamilton, [4]Kevin L. Childs, [5]Dean DellaPenna, [6]C Robin Buell, [7]Sarah E. O'Connor [Full author list] | Journal of Biological Chemistry [curation] | DOI: 10.1074/JBC.M111.225383
PubMed: 21454651 | Catharanthus roseus [curation]; stereoselectivity [curation]; Echitovenine [curation]; Lochnericine [curation]; hoerhammericine(1+) [curation]; (-)-(R)-19-hydroxytabersonine(1+) [curation]; (-)-minovincinine(1+) [curation]; methyl (1R,12S,13R,15S,20R)-12-[(1S)-1-hydroxyethyl]-14-oxa-8,17-diazahexacyclo[10.7.1.01,9.02,7.013,15.017,20]icosa-2,4,6,9-tetraene-10-carboxylate [curation]; OWKYNNRSCAFVFD-UHFFFAOYSA-N [curation] | 2011-05-01 |
| Genomic analysis of Xanthomonas oryzae isolates from rice grown in the United States reveals substantial divergence from known X. oryzae pathovars | [1]L R Triplett, [2]John P Hamilton, [3]C R Buell, [4]N A Tisserat, [5]Valerie Verdier, [6]F Zink, [7]J E Leach [Full author list] | Applied and Environmental Microbiology [curation] | DOI: 10.1128/AEM.00028-11
PubMed: 21515727 | Xanthomonas oryzae [curation] | 2011-04-22 |
| Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire | [1]C André Lévesque, [2]Henk Brouwer, [3]Liliana Cano, [4]John P Hamilton, [5]Carson Holt, [6]Edgar Huitema, [7]Sylvain Raffaele, [8]Gregg P Robideau, [9]Marco Thines, [10]Joe Win, ... [Full author list] | Genome Biology [curation] | DOI: 10.1186/GB-2010-11-7-R73
PubMed: 20626842 | Pythium ultimum [curation]; necrotrophy [curation] | 2010-07-13 |
| Genomics-Based Diagnostic Marker Development for Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola | [1]Jillian M Lang, [2]John P Hamilton, [2-Q54659043]John P Hamilton, [3]Maria Genaleen Q Diaz, [4]Marie-Anne Van Sluys, [5]Ma Ruby G Burgos, [6]Casiana M Vera Cruz, [7]C Robin Buell, [8]Ned A Tisserat, [9]Jan E Leach [Full author list] | Plant Disease [curation] | DOI: 10.1094/PDIS-94-3-0311
PubMed: 30754246 | diagnosis [curation] | 2010-03-01 |
| Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches | [1]Foo Cheung, [2]Joe Win, [3]Jillian M Lang, [4]John P Hamilton, [5]Hue Vuong, [6]Jan E Leach, [7]Sophien Kamoun, [8]C André Lévesque, [9]Ned Tisserat, [10]C Robin Buell [Full author list] | BMC Genomics [curation] | DOI: 10.1186/1471-2164-9-542
PubMed: 19014603 | transcriptome [curation]; pyrosequencing [curation]; Pythium ultimum [curation] | 2008-11-15 |
| Identification and characterization of lineage-specific genes within the Poaceae | [1]Matthew A Campbell, [2]Wei Zhu, [3]Ning Jiang, [4]Haining Lin, [5]Shu Ouyang, [6]Kevin L. Childs, [7]Brian J Haas, [8]John P Hamilton, [9]C Robin Buell [Full author list] | Plant Physiology [curation] | DOI: 10.1104/PP.107.104513
PubMed: 17951464 | Poaceae [curation] | 2007-12-01 |
| EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome | [1]Francoise Thibaud-Nissen, [2]Matthew Campbell, [3]John P Hamilton, [4]Wei Zhu, [5]C Robin Buell [Full author list] | BMC Genomics [curation] | DOI: 10.1186/1471-2164-8-388
PubMed: 17961238 | | 2007-10-25 |
| The TIGR Plant Transcript Assemblies database | [1]Kevin L. Childs, [2]John P Hamilton, [3]Wei Zhu, [4]Eugene Ly, [5]Foo Cheung, [6]Hank Wu, [7]Pablo D Rabinowicz, [8]Chris D Town, [9]C Robin Buell, [10]Agnes P Chan [Full author list] | Nucleic Acids Research [curation] | DOI: 10.1093/NAR/GKL785
PubMed: 17088284 | database [curation] | 2007-01-01 |
| Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis | [1]Matthew A Campbell, [2]Brian J Haas, [3]John P Hamilton, [4]Stephen M. Mount, [5]C Robin Buell [Full author list] | BMC Genomics [curation] | DOI: 10.1186/1471-2164-7-327
PubMed: 17194304 | alternative mRNA splicing, via spliceosome [curation] | 2006-12-28 |
| The TIGR Rice Genome Annotation Resource: improvements and new features | [1]Shu Ouyang, [2]Wei Zhu, [3]John P Hamilton, [4]Haining Lin, [5]Matthew Campbell, [6]Kevin L. Childs, [7]Francoise Thibaud-Nissen, [8]Renae L Malek, [9]Yuandan Lee, [10]Li Zheng, [11]Joshua Orvis, [12]Brian Haas, [13]Jennifer R Wortman, [14]C Robin Buell [Full author list] | Nucleic Acids Research [curation] | DOI: 10.1093/NAR/GKL976
PubMed: 17145706 | genome annotation [curation] | 2006-12-01 |
| Expressed sequence tags from loblolly pine embryos reveal similarities with angiosperm embryogenesis | [1]John Cairney, [2]Li Zheng, [3]Allison Cowels, [4]Joseph Hsiao, [5]Victoria Zismann, [6]Jia Liu, [7]Shu Ouyang, [8]Francoise Thibaud-Nissen, [9]John P Hamilton, [10]Kevin L. Childs, [11]Gerald S Pullman, [12]Yiting Zhang, [13]Thomas Oh, [14]C Robin Buell [Full author list] | Plant Molecular Biology [curation] | DOI: 10.1007/S11103-006-9035-9
PubMed: 17001497 | embryogenesis [curation] | 2006-09-26 |
| The institute for genomic research Osa1 rice genome annotation database | [1]Qiaoping Yuan, [2]Shu Ouyang, [3]Aihui Wang, [4]Wei Zhu, [5]Rama Maiti, [6]Haining Lin, [7]John P Hamilton, [8]Brian Haas, [9]Razvan Sultana, [10]Foo Cheung, [11]Jennifer R Wortman, [12]C Robin Buell [Full author list] | Plant Physiology [curation] | DOI: 10.1104/PP.104.059063
PubMed: 15888674 | database [curation]; genome annotation [curation] | 2005-05-01 |