| Title | Authors (identified) | Published In | Identifier(s) | Topic | Published Date |
|---|
| Recommendations for interoperability among infrastructures | [1]Sofie Meeus, [2]Wouter Addink, [3]Donat Agosti, [4]Christos Arvanitidis, [5]Bachir Balech, [6]Mathias Dillen, [7]Mariya Dimitrova, [8]Juan Miguel González-Aranda, [9]Jörg Holetschek, [10]Sharif Islam, [11]Thomas Stjernegaard Jeppesen, [12]Daniel Mietchen, [13]Nicky Nicolson, [14]Lyubomir Penev, [15]Tim Robertson, [16]Patrick Ruch, [17]Maarten Trekels, [18]Quentin J. Groom [Full author list] | Research Ideas and Outcomes [curation] | DOI: 10.3897/RIO.8.E96180
| interoperability [curation]; data infrastructure [curation] | 2022-10-14 |
| Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR | [1]Robert M. Waterhouse, [2]Anne-Françoise Adam-Blondon, [3]Donat Agosti, [4]Petr Baldrian, [5]Bachir Balech, [6]Erwan Corre, [7]Robert P Davey, [8]Henrik Lantz, [9]Graziano Pesole, [10]Christian Quast, [11]Frank Oliver Glöckner, [12]Niels Raes, [13]Anna Sandionigi, [14]Anna Sandionigi, [15]Wouter Addink, [16]Jiri Vohradsky, [17]Amandine Nunes-Jorge, [18]Nils Peder Willassen, [19]Jerry Lanfear [Full author list] | F1000Research [curation] | DOI: 10.12688/F1000RESEARCH.73825.2
| biodiversity [curation]; research infrastructure [curation] | 2022-08-01 |
| Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR | [1]Robert M. Waterhouse, [2]Anne-Françoise Adam-Blondon, [3]Donat Agosti, [4]Petr Baldrian, [5]Bachir Balech, [6]Erwan Corre, [7]Robert P. Davey, [8]Henrik Lantz, [9]Graziano Pesole, [10]Christian Quast, [11]Frank Oliver Glöckner, [12]Niels Raes, [13]Anna Sandionigi, [14]Monica Santamaria, [15]Wouter Addink, [16]Jiri Vohradsky, [17]Amandine Nunes-Jorge, [18]Nils Peder Willassen, [19]Jerry Lanfear [Full author list] | F1000Research [curation] | DOI: 10.12688/F1000RESEARCH.73825.1
| biodiversity [curation]; research infrastructure [curation] | 2021-12-03 |
| Tackling critical parameters in metazoan meta-barcoding experiments: a preliminary study based on coxI DNA barcode | [1]Bachir Balech, [2]Anna Sandionigi, [3]Caterina Manzari, [4]Emiliano Trucchi, [5]Apollonia Tullo, [6]Flavio Licciulli, [7]Giorgio Grillo, [8]Elisabetta Sbisà, [9]Stefano De Felici, [10]Cecilia Saccone, [11]Anna Maria D'Erchia, [12]Donatella Cesaroni, [13]Maurizio Casiraghi, [14]Saverio Vicario [Full author list] | PeerJ [curation] | DOI: 10.7717/PEERJ.4845
PubMed: 29915686 | metabarcoding [curation] | 2018-06-13 |
| DNA Multiple Sequence Alignment Guided by Protein Domains: The MSA-PAD 2.0 Method. | [1]Bachir Balech, [2]Alfonso Monaco, [3]Michele Perniola, [4]Monica Santamaria, [5]Giacinto Donvito, [6]Saverio Vicario, [7]Giorgio Maggi, [8]Graziano Pesole [Full author list] | Methods in Molecular Biology [curation] | DOI: 10.1007/978-1-4939-7683-6_13
PubMed: 29492894 | sequence alignment [curation] | 2018-01-01 |
| ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences | [1]Monica Santamaria, [2]Bruno Fosso, [3]Flavio Licciulli, [4]Bachir Balech, [5]Ilaria Larini, [6]Giorgio Grillo, [7]Giorgio De Caro, [8]Sabino Liuni, [9]Graziano Pesole [Full author list] | Nucleic Acids Research [curation] | DOI: 10.1093/NAR/GKX855
PubMed: 29036529 | | 2017-09-25 |
| BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology | [1]Alex Hardisty, [2]Finn Bacall, [3]Niall Beard, [4]Maria-Paula Balcázar-Vargas, [5]Bachir Balech, [6]Zoltán Barcza, [7]Sarah Bourlat, [8]Renato De Giovanni, [9]Yde de Jong, [10]Francesca De Leo, ..., [3-Q42530541]Niall Beard, ..., [48-Q42530517]Marko Tähtinen, ... [Full author list] | BMC Ecology [curation] | DOI: 10.1186/S12898-016-0103-Y
PubMed: 27765035 | biodiversity [curation]; data analysis [curation]; biodiversity data [curation]; biodiversity science [curation] | 2016-10-20 |
| Sexual Polyploidization in Medicago sativa L.: Impact on the Phenotype, Gene Transcription, and Genome Methylation | [1]Daniele Rosellini, [2]Nicoletta Ferradini, [3]Stefano Allegrucci, [4]Stefano Capomaccio, [5]Elisa Debora Zago, [6]Paola Leonetti, [7]Bachir Balech, [8]Riccardo Aversano, [9]Domenico Carputo, [10]Lara Reale, [11]Fabio Veronesi [Full author list] | G3 [curation] | DOI: 10.1534/G3.115.026021
PubMed: 26858330 | Medicago sativa [curation]; whole genome duplication [curation] | 2016-04-07 |
| MSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information | [1]Bachir Balech, [2]Saverio Vicario, [3]Giacinto Donvito, [4]Alfonso Monaco, [5]Pasquale Notarangelo, [6]Graziano Pesole [Full author list] | Bioinformatics [curation] | DOI: 10.1093/BIOINFORMATICS/BTV141
PubMed: 25819080 | sequence alignment [curation] | 2015-03-26 |
| Discovering Variability Patterns for Change Detection in Complex Phenotype Data | [1]Corrado Loglisci, [2]Bachir Balech, [3]Donato Malerba [Full author list] | Lecture Notes in Computer Science [curation] | DOI: 10.1007/978-3-319-25252-0_2
| | 2015-01-01 |
| Towards a better understanding of Apis mellifera and Varroa destructor microbiomes: introducing 'phyloh' as a novel phylogenetic diversity analysis tool | [1]A Sandionigi, [2]Saverio Vicario, [3]E M Prosdocimi, [4]Andrea Galimberti, [5]E Ferri, [6]A Bruno, [7]Bachir Balech, [8]Antonia Bruno, [8-Q57256112]Valerio Mezzasalma, [9]M Casiraghi [Full author list] | Molecular Ecology Resources [curation] | DOI: 10.1111/1755-0998.12341
PubMed: 25367306 | Apis mellifera [curation]; Varroa destructor [curation]; phylogenetics [curation]; microbiome [curation] | 2014-11-19 |
| Enriched biodiversity data as a resource and service | [1]Rutger Vos, [2]Jordan Biserkov, [3]Bachir Balech, [4]Niall Beard, [5]Matthew Blissett, [6]Christian Brenninkmeijer, [7]Tom van Dooren, [8]David Eades, [9]George Gosline, [10]Quentin J. Groom, ... [Full author list] | Biodiversity Data Journal [curation] | DOI: 10.3897/BDJ.2.E1125
PubMed: 25057255 | hackathon [curation]; biodiversity [curation]; Naturalis Biodiversity Center [curation]; biodiversity informatics [curation]; data sharing [curation]; biodiversity data [curation] | 2014-06-16 |
| The BioVel Project: Robust phylogenetic workflows running on the GRID | [1]Saverio Vicario, [2]Bachir Balech, [3]Giacinto Donvito, [4]Pasquale Notarangelo, [5]Graziano Pesole [Full author list] | EMBnet.Journal [curation] | DOI: 10.14806/EJ.18.B.557
| phylogenetics [curation]; workflow [curation] | 2012-11-09 |