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Doris Bachtrog

Wikidata Item | Scholia Profile [curation] | Reasonator | SQID

Listed Publications

70 publications found

TitleAuthors (identified)Published InIdentifier(s)TopicPublished Date
Dynamics and Impacts of Transposable Element Proliferation in the Drosophila nasuta Species Group Radiation[1]Kevin H-C Wei, [2]Dat Mai, [3]Kamalakar Chatla, [4]Doris Bachtrog [Full author list]Molecular Biology and Evolution [curation]DOI: 10.1093/MOLBEV/MSAC080
Drosophila nasuta [curation]2022-04-25
Epigenetic conflict on a degenerating Y chromosome increases mutational burden in Drosophila males[1]Kevin H-C Wei, [2]Lauren Gibilisco, [3]Doris Bachtrog [Full author list]Nature Communications [curation]DOI: 10.1038/S41467-020-19134-9
PubMed: 33139741
2020-11-02
The Y chromosome may contribute to sex-specific ageing in Drosophila[1]Emily J Brown, [2]Alison H Nguyen, [3]Doris Bachtrog [Full author list]Nature Ecology and Evolution [curation]DOI: 10.1038/S41559-020-1179-5
PubMed: 32313175
2020-04-20
Chromosome-Level Assembly of Drosophila bifasciata Reveals Important Karyotypic Transition of the X Chromosome[1]Ryan Bracewell, [2]Anita Tran, [3]Kamalakar Chatla, [4]Doris Bachtrog [Full author list]G3 [curation]DOI: 10.1534/G3.119.400922
PubMed: 31969429
Drosophila bifasciata [curation]2020-03-05
Ancestral male recombination in Drosophila albomicans produced geographically restricted neo-Y chromosome haplotypes varying in age and onset of decay[1]Kevin H-C Wei, [2]Doris Bachtrog [Full author list]PLOS Genetics [curation]DOI: 10.1371/JOURNAL.PGEN.1008502
PubMed: 31738748
Drosophila albomicans [curation]2019-11-18
Massive gene amplification on a recently formed Drosophila Y chromosome[1]Doris Bachtrog, [2]Shivani Mahajan, [3]Ryan Bracewell [Full author list]Nature Ecology and Evolution [curation]DOI: 10.1038/S41559-019-1009-9
PubMed: 31666742
2019-10-28
Dynamic turnover of centromeres drives karyotype evolution in Drosophila[1]Ryan Bracewell, [2]Kamalakar Chatla, [3]Matthew J Nalley, [4]Doris Bachtrog [Full author list]eLife [curation]DOI: 10.7554/ELIFE.49002
PubMed: 31524597
2019-09-16
Recurrent gene co-amplification on Drosophila X and Y chromosomes[1]Christopher Ellison, [2]Doris Bachtrog [Full author list]PLOS Genetics [curation]DOI: 10.1371/JOURNAL.PGEN.1008251
PubMed: 31329593
2019-07-22
Contingency in the convergent evolution of a regulatory network: Dosage compensation in Drosophila[1]Christopher Ellison, [2]Doris Bachtrog [Full author list]PLOS Biology [curation]DOI: 10.1371/JOURNAL.PBIO.3000094
PubMed: 30742611
convergent evolution [curation]2019-02-11
De novo assembly of a young Drosophila Y chromosome using single-molecule sequencing and chromatin conformation capture.[1]Shivani Mahajan, [2]Kevin H-C Wei, [3]Matthew J Nalley, [4]Lauren Gibilisco, [5]Doris Bachtrog [Full author list]PLOS Biology [curation]DOI: 10.1371/JOURNAL.PBIO.2006348
PubMed: 30059545
2018-07-30
Convergent evolution of Y chromosome gene content in flies[1]Shivani Mahajan, [2]Doris Bachtrog [Full author list]Nature Communications [curation]DOI: 10.1038/S41467-017-00653-X
PubMed: 28978907
convergent evolution [curation]2017-10-04
Patterns of genome-wide diversity and population structure in the Drosophila athabasca species complex[1]Karen M Wong Miller, [2]Ryan R Bracewell, [3]Michael B. Eisen, [4]Doris Bachtrog [Full author list]Molecular Biology and Evolution [curation]DOI: 10.1093/MOLBEV/MSX134
PubMed: 28431021
Drosophila [curation]; Drosophila athabasca [curation]; population structure [curation]2017-08-01
Alternative Splicing within and between Drosophila Species, Sexes, Tissues, and Developmental Stages[1]Lauren Gibilisco, [2]Qi Zhou, [3]Shivani Mahajan, [4]Doris Bachtrog [Full author list]PLOS Genetics [curation]DOI: 10.1371/JOURNAL.PGEN.1006464
PubMed: 27935948
Drosophila [curation]; alternative mRNA splicing, via spliceosome [curation]2016-12-09
Rapid divergence and diversification of mammalian duplicate gene functions[1]Raquel Assis, [2]Doris Bachtrog [Full author list]BMC Evolutionary Biology [curation]DOI: 10.1186/S12862-015-0426-X
PubMed: 26173681
2015-07-15
Ancestral Chromatin Configuration Constrains Chromatin Evolution on Differentiating Sex Chromosomes in Drosophila[1]Qi Zhou, [2]Doris Bachtrog [Full author list]PLOS Genetics [curation]DOI: 10.1371/JOURNAL.PGEN.1005331
PubMed: 26114585
2015-06-26
Numerous transitions of sex chromosomes in Diptera[1]Beatriz Vicoso, [2]Doris Bachtrog [Full author list]PLOS Biology [curation]DOI: 10.1371/JOURNAL.PBIO.1002078
PubMed: 25879221
Diptera [curation]2015-04-16
Non-allelic gene conversion enables rapid evolutionary change at multiple regulatory sites encoded by transposable elements[1]Christopher E Ellison, [2]Doris Bachtrog [Full author list]eLife [curation]DOI: 10.7554/ELIFE.05899
PubMed: 25688566
evolutionary change [curation]2015-02-17
Partial dosage compensation in Strepsiptera, a sister group of beetles[1]Shivani Mahajan, [2]Doris Bachtrog [Full author list]Genome Biology and Evolution [curation]DOI: 10.1093/GBE/EVV008
PubMed: 25601100
Strepsiptera [curation]; RNA sequencing [curation]2015-01-18
Complex evolutionary trajectories of sex chromosomes across bird taxa[1]Qi Zhou, [2]Jilin Zhang, [3]Doris Bachtrog, [4]Na An, [5]Quanfei Huang, [6]Erich Jarvis, [7]Marcus Thomas Pius Gilbert, [8]Guojie Zhang [Full author list]Science [curation]DOI: 10.1126/SCIENCE.1246338
PubMed: 25504727
bird [curation]2014-12-11
Signs of genomic battles in mouse sex chromosomes[1]Doris Bachtrog [Full author list]Cell [curation]DOI: 10.1016/J.CELL.2014.10.036
PubMed: 25417148
2014-11-01
Strepsiptera, phylogenomics and the long branch attraction problem[1]Bastien Boussau, [2]Zaak Walton, [3]Juan A Delgado, [4]Francisco Collantes, [5]Laura Beani, [6]Isaac J Stewart, [7]Sydney A Cameron, [8]James B. Whitfield, [9]J Spencer Johnston, [10]Peter Holland, [11]Doris Bachtrog, [12]Jeyaraney Kathirithamby, [13]John P Huelsenbeck [Full author list]PLOS One [curation]DOI: 10.1371/JOURNAL.PONE.0107709
PubMed: 25272037
Strepsiptera [curation]; phylogenomics [curation]2014-10-01
Sex determination: why so many ways of doing it?[1]Doris Bachtrog, [2]Judith E. Mank, [3]Catherine L Peichel, [4]Mark Kirkpatrick, [5]Sarah Otto, [7]Matthew W Hahn, [8]Jun Kitano, [9]Itay Mayrose, [10]Ray Ming, [11]Nicolas Perrin, [12]Laura Ross, [13]Nicole Valenzuela, [14]Jana C. Vamosi, [2-Q21263540]Judith E. Mank, [6]Tia-Lynn Ashman [Full author list]PLOS Biology [curation]DOI: 10.1371/JOURNAL.PBIO.1001899
PubMed: 24983465
cell [curation]; sex-determination system [curation]; physiological phenomenon [curation]2014-07-01
The chromatin landscape of Drosophila: comparisons between species, sexes, and chromosomes[1]Emily J Brown, [2]Doris Bachtrog [Full author list]Genome Research [curation]DOI: 10.1101/GR.172155.114
PubMed: 24840603
Drosophila [curation]2014-05-19
De novo transcriptome assembly reveals sex-specific selection acting on evolving neo-sex chromosomes in Drosophila miranda[1]Vera B Kaiser, [2]Doris Bachtrog [Full author list]BMC Genomics [curation]DOI: 10.1186/1471-2164-15-241
PubMed: 24673816
RNA sequencing [curation]; Drosophila miranda [curation]2014-03-27
Sex-specific embryonic gene expression in species with newly evolved sex chromosomes[1]Susan E Lott, [2]Jacqueline E Villalta, [3]Qi Zhou, [4]Doris Bachtrog, [5]Michael B. Eisen, [6]Susan Lott [Full author list]PLOS Genetics [curation]DOI: 10.1371/JOURNAL.PGEN.1004159
PubMed: 24550743
2014-02-13
The epigenome of evolving Drosophila neo-sex chromosomes: dosage compensation and heterochromatin formation[1]Qi Zhou, [2]Christopher E Ellison, [3]Vera B Kaiser, [4]Artyom A Alekseyenko, [5]Andrey A Gorchakov, [6]Doris Bachtrog [Full author list]PLOS Biology [curation]DOI: 10.1371/JOURNAL.PBIO.1001711
PubMed: 24265597
Drosophila [curation]2013-11-12
Dosage compensation via transposable element mediated rewiring of a regulatory network[1]Christopher E Ellison, [2]Doris Bachtrog [Full author list]Science [curation]DOI: 10.1126/SCIENCE.1239552
PubMed: 24233721
2013-11-01
Neofunctionalization of young duplicate genes in Drosophila[1]Raquel Assis, [2]Doris Bachtrog [Full author list]Proceedings of the National Academy of Sciences of the United States of America [curation]DOI: 10.1073/PNAS.1313759110
PubMed: 24101476
Drosophila [curation]2013-10-07
Reversal of an ancient sex chromosome to an autosome in Drosophila[1]Beatriz Vicoso, [2]Doris Bachtrog [Full author list]Nature [curation]DOI: 10.1038/NATURE12235
PubMed: 23792562
Drosophila [curation]2013-06-23
Horizontal gene transfer from diverse bacteria to an insect genome enables a tripartite nested mealybug symbiosis.[1]Filip Husník, [2]Naruo Nikoh, [3]Ryuichi Koga, [4]Laura Ross, [5]Rebecca P. Duncan, [6]Manabu Fujie, [7]Makiko Tanaka, [8]Nori Satoh, [9]Doris Bachtrog, [10]Alex C C Wilson, [11]Carol D. von Dohlen, [12]Takema Fukatsu, [13]John P. McCutcheon [Full author list]Cell [curation]DOI: 10.1016/J.CELL.2013.05.040
PubMed: 23791183
insect [curation]; horizontal gene transfer [curation]2013-06-01
Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution[1]Beatriz Vicoso, [2]Vera B Kaiser, [3]Doris Bachtrog [Full author list]Proceedings of the National Academy of Sciences of the United States of America [curation]DOI: 10.1073/PNAS.1217027110
PubMed: 23547111
2013-04-01
Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila[1]Artyom A Alekseyenko, [2]Christopher E Ellison, [3]Andrey A Gorchakov, [4]Qi Zhou, [5]Vera B Kaiser, [6]Nick Toda, [7]Zaak Walton, [8]Shouyong Peng, [9]Peter J Park, [10]Doris Bachtrog, [11]Mitzi I Kuroda [Full author list]Genes & Development [curation]DOI: 10.1101/GAD.215426.113
PubMed: 23630075
Drosophila [curation]2013-04-01
Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration[1]Doris Bachtrog [Full author list]Nature Reviews Genetics [curation]DOI: 10.1038/NRG3366
PubMed: 23329112
2013-02-01
Sex-specific adaptation drives early sex chromosome evolution in Drosophila[1]Qi Zhou, [2]Doris Bachtrog [Full author list]Science [curation]DOI: 10.1126/SCIENCE.1225385
PubMed: 22822149
Drosophila [curation]2012-07-01
Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans[1]Qi Zhou, [2]Hong-mei Zhu, [3]Quan-fei Huang, [4]Li Zhao, [5]Guo-jie Zhang, [6]Scott W Roy, [7]Beatriz Vicoso, [8]Zhao-lin Xuan, [9]Jue Ruan, [10]Yue Zhang, [11]Ruo-ping Zhao, [12]Chen Ye, [13]Xiu-qing Zhang, [14]Jun Wang, [15]Wen Wang, [15-Q30503057]Guojie Zhang, [16]Doris Bachtrog [Full author list]BMC Genomics [curation]DOI: 10.1186/1471-2164-13-109
PubMed: 22439699
Drosophila [curation]; Drosophila albomicans [curation]2012-03-22
Chromosome-wide gene silencing initiates Y degeneration in Drosophila.[1]Qi Zhou, [2]Doris Bachtrog [Full author list]Current Biology [curation]DOI: 10.1016/J.CUB.2012.01.057
PubMed: 22365853
gene silencing [curation]2012-02-23
Sex-biased transcriptome evolution in Drosophila[1]Raquel Assis, [2]Qi Zhou, [3]Doris Bachtrog [Full author list]Genome Biology and Evolution [curation]DOI: 10.1093/GBE/EVS093
PubMed: 23097318
transcriptome [curation]; Drosophila [curation]; RNA sequencing [curation]2012-01-01
Nonrandom gene loss from the Drosophila miranda neo-Y chromosome[1]Vera B Kaiser, [2]Qi Zhou, [3]Doris Bachtrog [Full author list]Genome Biology and Evolution [curation]DOI: 10.1093/GBE/EVR103
PubMed: 21987387
RNA sequencing [curation]; Drosophila miranda [curation]; gene loss [curation]2011-10-10
Are all sex chromosomes created equal?[1]Doris Bachtrog, [2]Mark Kirkpatrick, [3]Judith E. Mank, [4]Stuart F McDaniel, [5]Joseph Christopher Pires, [6]William Rice, [7]Nicole Valenzuela [Full author list]Trends in Genetics [curation]DOI: 10.1016/J.TIG.2011.05.005
PubMed: 21962970
2011-09-01
Plant sex chromosomes: a non-degenerated Y?[1]Doris Bachtrog [Full author list]Current Biology [curation]DOI: 10.1016/J.CUB.2011.08.027
PubMed: 21959153
2011-09-01
Characterizing the influence of effective population size on the rate of adaptation: Gillespie's Darwin domain[1]Jeffrey D Jensen, [2]Doris Bachtrog [Full author list]Genome Biology and Evolution [curation]DOI: 10.1093/GBE/EVR063
PubMed: 21705473
2011-06-24
Correlated evolution of nearby residues in Drosophilid proteins[1]Benjamin Callahan, [2]Richard A. Neher, [3]Doris Bachtrog, [4]Peter Andolfatto, [5]Boris I Shraiman [Full author list]PLOS Genetics [curation]DOI: 10.1371/JOURNAL.PGEN.1001315
PubMed: 21383965
protein evolution [curation]2011-02-24
Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite[1]Beatriz Vicoso, [2]Doris Bachtrog [Full author list]Genome Biology and Evolution [curation]DOI: 10.1093/GBE/EVR010
PubMed: 21317157
Schistosoma mansoni [curation]2011-02-11
Effective population size and the efficacy of selection on the X chromosomes of two closely related Drosophila species[1]Peter Andolfatto, [2]Karen M Wong, [3]Doris Bachtrog [Full author list]Genome Biology and Evolution [curation]DOI: 10.1093/GBE/EVQ086
PubMed: 21173424
Drosophila [curation]2010-12-20
Dosage compensation and demasculinization of X chromosomes in Drosophila[1]Doris Bachtrog, [2]Nicholas R T Toda, [3]Steven Lockton [Full author list]Current Biology [curation]DOI: 10.1016/J.CUB.2010.06.076
PubMed: 20705467
Drosophila [curation]2010-08-12
Characterizing recurrent positive selection at fast-evolving genes in Drosophila miranda and Drosophila pseudoobscura[1]Jeffrey D. Jensen, [2]Doris Bachtrog [Full author list]Genome Biology and Evolution [curation]DOI: 10.1093/GBE/EVQ028
PubMed: 20624741
Drosophila pseudoobscura [curation]; Drosophila miranda [curation]2010-07-12
Evolution of sex chromosomes in insects[1]Vera B Kaiser, [2]Doris Bachtrog [Full author list]Annual Review of Genetics [curation]DOI: 10.1146/ANNUREV-GENET-102209-163600
PubMed: 21047257
2010-01-01
Accelerated adaptive evolution on a newly formed X chromosome[1]Doris Bachtrog, [2]Jeffrey D. Jensen, [3]Zhi Zhang [Full author list]PLOS Biology [curation]DOI: 10.1371/JOURNAL.PBIO.1000082
PubMed: 19402745
adaptive evolution [curation]2009-04-01
Progress and prospects toward our understanding of the evolution of dosage compensation[1]Beatriz Vicoso, [2]Doris Bachtrog [Full author list]Chromosome Research [curation]DOI: 10.1007/S10577-009-9053-Y
PubMed: 19626444
cell [curation]; regulation of gene expression [curation]2009-01-01
Similar rates of protein adaptation in Drosophila miranda and D. melanogaster, two species with different current effective population sizes[1]Doris Bachtrog [Full author list]BMC Evolutionary Biology [curation]DOI: 10.1186/1471-2148-8-334
PubMed: 19091130
Drosophila melanogaster [curation]; Drosophila miranda [curation]2008-12-18
Gene content evolution on the X chromosome[1]Tatiana A Gurbich, [2]Doris Bachtrog [Full author list]Current Opinion in Genetics & Development [curation]DOI: 10.1016/J.GDE.2008.09.006
PubMed: 18929654
2008-10-16
Positive selection at the binding sites of the male-specific lethal complex involved in dosage compensation in Drosophila[1]Doris Bachtrog [Full author list]Genetics [curation]DOI: 10.1534/GENETICS.107.084244
PubMed: 18780755
Drosophila [curation]2008-09-09
The temporal dynamics of processes underlying Y chromosome degeneration[1]Doris Bachtrog [Full author list]Genetics [curation]DOI: 10.1534/GENETICS.107.084012
PubMed: 18562655
temporal dynamics [curation]2008-06-18
Positive and negative selection on noncoding DNA in Drosophila simulans[1]Penelope R Haddrill, [2]Doris Bachtrog, [3]Peter Andolfatto [Full author list]Molecular Biology and Evolution [curation]DOI: 10.1093/MOLBEV/MSN125
PubMed: 18515263
Drosophila simulans [curation]; Drosophila [curation]2008-05-29
Genomic degradation of a young Y chromosome in Drosophila miranda[1]Doris Bachtrog, [2]Emily Hom, [3]Karen M Wong, [4]Xulio Maside, [5]Pieter de Jong [Full author list]Genome Biology [curation]DOI: 10.1186/GB-2008-9-2-R30
PubMed: 18269752
Drosophila miranda [curation]2008-02-12
Evidence for male-driven evolution in Drosophila.[1]Doris Bachtrog [Full author list]Molecular Biology and Evolution [curation]DOI: 10.1093/MOLBEV/MSN020
PubMed: 18234707
2008-01-29
Reduced selection for codon usage bias in Drosophila miranda[1]Doris Bachtrog [Full author list]Journal of Molecular Evolution [curation]DOI: 10.1007/S00239-006-0257-X
PubMed: 17457633
bias [curation]; Drosophila miranda [curation]2007-04-24
A dynamic view of sex chromosome evolution[1]Doris Bachtrog [Full author list]Current Opinion in Genetics & Development [curation]DOI: 10.1016/J.GDE.2006.10.007
PubMed: 17055249
2006-10-19
Selection, recombination and demographic history in Drosophila miranda[1]Doris Bachtrog, [2]Peter Andolfatto [Full author list]Genetics [curation]DOI: 10.1534/GENETICS.106.062760
PubMed: 17028331
demographics [curation]; Drosophila miranda [curation]2006-10-08
Expression profile of a degenerating neo-y chromosome in Drosophila.[1]Doris Bachtrog [Full author list]Current Biology [curation]DOI: 10.1016/J.CUB.2006.07.053
PubMed: 16950105
2006-09-01
X chromosomes and autosomes evolve at similar rates in Drosophila: no evidence for faster-X protein evolution[1]Kevin R Thornton, [2]Doris Bachtrog, [3]Peter Andolfatto [Full author list]Genome Research [curation]DOI: 10.1101/GR.4447906
PubMed: 16520459
Drosophila [curation]; protein evolution [curation]2006-03-06
Extensive introgression of mitochondrial DNA relative to nuclear genes in the Drosophila yakuba species group[0]Andrew G. Clark, [1]Doris Bachtrog, [2]Kevin R Thornton, [3]Andrew Clark, [4]Peter Andolfatto [Full author list]Evolution [curation]DOI: 10.1554/05-337.1
PubMed: 16610321
mitochondrial DNA [curation]; Drosophila [curation]; Drosophila yakuba [curation]2006-02-01
Sex chromosome evolution: molecular aspects of Y-chromosome degeneration in Drosophila[1]Doris Bachtrog [Full author list]Genome Research [curation]DOI: 10.1101/GR.3543605
PubMed: 16169921
Drosophila [curation]2005-09-16
Evidence that positive selection drives Y-chromosome degeneration in Drosophila miranda.[1]Doris Bachtrog [Full author list]Nature Genetics [curation]DOI: 10.1038/NG1347
PubMed: 15107853
Drosophila miranda [curation]2004-04-25
Protein evolution and codon usage bias on the neo-sex chromosomes of Drosophila miranda[1]Doris Bachtrog, [1-Q62567099]Doris Bachtrog [Full author list]Genetics [curation]PubMed: 14668377bias [curation]; Drosophila miranda [curation]; protein evolution [curation]2003-11-01
A survey of chromosomal and nucleotide sequence variation in Drosophila miranda[1]Soojin Yi, [2]Doris Bachtrog, [3]Brian Charlesworth [Full author list]Genetics [curation]PubMed: 12930746Drosophila miranda [curation]2003-08-01
On the genomic location of the exuperantia1 gene in Drosophila miranda: the limits of in situ hybridization experiments[1]Doris Bachtrog, [2]Brian Charlesworth [Full author list]Genetics [curation]PubMed: 12871928Drosophila miranda [curation]2003-07-01
Adaptation shapes patterns of genome evolution on sexual and asexual chromosomes in Drosophila[1]Doris Bachtrog [Full author list]Nature Genetics [curation]DOI: 10.1038/NG1164
PubMed: 12754509
evolution [curation]; genetics [curation]2003-06-01
Accumulation of Spock and Worf, two novel non-LTR retrotransposons, on the neo-Y chromosome of Drosophila miranda[1]Doris Bachtrog [Full author list]Molecular Biology and Evolution [curation]DOI: 10.1093/MOLBEV/MSG035
PubMed: 12598683
retrotransposon [curation]; Drosophila miranda [curation]2003-02-01
Reduced adaptation of a non-recombining neo-Y chromosome.[1]Doris Bachtrog, [2]Brian Charlesworth [Full author list]Nature [curation]DOI: 10.1038/416323A
PubMed: 11907578
2002-03-01
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