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50 publications found

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Group #3

TitleAuthors (identified)Published InIdentifier(s)TopicPublished DateMatch?
Integrative analysis of methylation and transcriptional profiles to predict aging and construct aging specific cross-tissue networks[1]Yin Wang, [2]Tao Huang, [3]Lu Xie, [4]Lei Liu [Full author list]BMC Systems Biology [missing]DOI: 10.1186/S12918-016-0354-4 [ORCID]
PubMed: 28155676 [ORCID]
2016-12-23
Nonsynonymous Single-Nucleotide Variations on Some Posttranslational Modifications of Human Proteins and the Association with Diseases[1]Bo Sun, [2]Menghuan Zhang, [3]Peng Cui, [4]Hong Li, [5]Jia Jia, [6]Yixue Li, [7]Lu Xie [Full author list]Computational and Mathematical Methods in Medicine [missing]DOI: 10.1155/2015/124630 [ORCID]
PubMed: 26495027 [ORCID]
2015-10-01
Identification of HPV integration and gene mutation in HeLa cell line by integrated analysis of RNA-Seq and MS/MS data[1]Han Sun, [2]Chen Chen, [3]Baofeng Lian, [4]Menghuan Zhang, [5]Xiaojing Wang, [6]Bing Zhang, [7]Yixue Li, [8]Pengyuan Yang, [9]Lu Xie [Full author list]Journal of Proteome Research [missing]DOI: 10.1021/PR500944C [ORCID]
PubMed: 25698088 [ORCID]
HeLa [missing]; RNA sequencing [missing]; RNA-Seq [missing]; RNA analysis [missing]2015-03-10
Identifying prognostic features by bottom-up approach and correlating to drug repositioning[1]Wei Li, [2]Jian Yu, [3]Baofeng Lian, [4]Han Sun, [5]Jing Li, [6]Menghuan Zhang, [7]Ling Li, [8]Yixue Li, [9]Qian Liu, [10]Lu Xie [Full author list]PLOS One [missing]DOI: 10.1371/JOURNAL.PONE.0118672 [ORCID]
PubMed: 25738841 [ORCID]
drug repositioning [missing]2015-01-01
Integration of mass spectrometry and RNA-Seq data to confirm human ab initio predicted genes and lncRNAs[1]Han Sun, [2]Chen Chen, [3]Meng Shi, [4]Dandan Wang, [5]Mingwei Liu, [6]Daixi Li, [7]Pengyuan Yang, [8]Yixue Li, [9]Lu Xie [Full author list]Proteomics [missing]DOI: 10.1002/PMIC.201400174 [ORCID]
PubMed: 25339270 [ORCID]
RNA sequencing [missing]; RNA-Seq [missing]2014-12-01
Integrated analysis of mutation data from various sources identifies key genes and signaling pathways in hepatocellular carcinoma[1]Yuannv Zhang, [2]Zhaoping Qiu, [3]Lin Wei, [4]Ruqi Tang, [5]Baofeng Lian, [6]Yingjun Zhao, [7]Xianghuo He, [8]Lu Xie [Full author list]PLOS One [missing]DOI: 10.1371/JOURNAL.PONE.0100854 [ORCID]
PubMed: 24988079 [ORCID]
hepatocellular carcinoma [missing]2014-07-02
Integrative analysis of transcriptional regulatory network and copy number variation in intrahepatic cholangiocarcinoma[1]Ling Li, [2]Baofeng Lian, [3]Chao Li, [4]Wei Li, [5]Jing Li, [6]Yuannv Zhang, [7]Xianghuo He, [8]Yixue Li, [9]Lu Xie [Full author list]PLOS One [missing]DOI: 10.1371/JOURNAL.PONE.0098653 [ORCID]
PubMed: 24897108 [ORCID]
cholangiocarcinoma [missing]2014-06-04
Application of microRNA and mRNA expression profiling on prognostic biomarker discovery for hepatocellular carcinoma[1]Lin Wei, [2]Baofeng Lian, [3]Yuannv Zhang, [4]Wei Li, [5]Jianren Gu, [6]Xianghuo He, [7]Lu Xie [Full author list]BMC Genomics [missing]DOI: 10.1186/1471-2164-15-S1-S13 [ORCID]
PubMed: 24564407 [ORCID]
microRNA [missing]; biomarker [missing]; hepatocellular carcinoma [missing]2014-01-24
Identification of gene fusions from human lung cancer mass spectrometry data[1]Han Sun, [2]Xiaobin Xing, [3]Jing Li, [4]Fengli Zhou, [5]Yunqin Chen, [6]Ying He, [7]Wei Li, [8]Guangwu Wei, [9]Xiao Chang, [10]Jia Jia, [11]Yixue Li, [12]Lu Xie [Full author list]BMC Genomics [missing]DOI: 10.1186/1471-2164-14-S8-S5 [ORCID]
PubMed: 24564548 [ORCID]
2013-12-09
Differential combinatorial regulatory network analysis related to venous metastasis of hepatocellular carcinoma[1]Lingyao Zeng, [2]Jian Yu, [3]Tao Huang, [4]Huliang Jia, [5]Qiongzhu Dong, [6]Fei He, [7]Weilan Yuan, [8]Lunxiu Qin, [9]Yixue Li, [10]Lu Xie [Full author list]BMC Genomics [missing]DOI: 10.1186/1471-2164-13-S8-S14 [ORCID]
PubMed: 23282077 [ORCID]
2012-12-17
Combinatorial network of transcriptional regulation and microRNA regulation in human cancer[1]Hui Yu, [2]Kang Tu, [3]Yi-Jie Wang, [4]Jun-Zhe Mao, [5]Lu Xie, [6]Yuan-Yuan Li, [7]Yi-Xue Li [Full author list]BMC Systems Biology [missing]DOI: 10.1186/1752-0509-6-61 [ORCID]
PubMed: 22691419 [ORCID]
microRNA [missing]2012-06-12
SyStemCell: a database populated with multiple levels of experimental data from stem cell differentiation research[1]Jian Yu, [2]Xiaobin Xing, [3]Lingyao Zeng, [4]Jiehuan Sun, [5]Wei Li, [6]Han Sun, [7]Ying He, [8]Jing Li, [9]Guoqing Zhang, [10]Chuan Wang, [11]Yixue Li, [12]Lu Xie [Full author list]PLOS One [missing]DOI: 10.1371/JOURNAL.PONE.0035230 [ORCID]
PubMed: 22807998 [ORCID]
database [missing]; cell differentiation [missing]; stem cell differentiation [missing]2012-01-01
The discovery of novel protein-coding features in mouse genome based on mass spectrometry data[1]Xiao-Bin Xing, [2]Qing-Run Li, [3]Han Sun, [4]Xing Fu, [5]Fei Zhan, [6]Xiu Huang, [7]Jing Li, [8]Chun-Lei Chen, [9]Yu Shyr, [10]Rong Zeng, [11]Yi-Xue Li, [12]Lu Xie [Full author list]Genomics [missing]DOI: 10.1016/J.YGENO.2011.07.005 [ORCID]
PubMed: 21840390 [ORCID]
2011-08-04
TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information[1]Qi Liu, [2]Yejun Tan, [3]Tao Huang, [4]Guohui Ding, [5]Zhidong Tu, [6]Lei Liu, [7]Yixue Li, [8]Hongyue Dai, [9]Lu Xie [Full author list]BMC Bioinformatics [missing]DOI: 10.1186/1471-2105-11-S11-S5 [ORCID]
PubMed: 21172055 [ORCID]
Gene Set Enrichment [missing]2010-12-14
dbDEPC: a database of differentially expressed proteins in human cancers[1]Hong Li, [2]Ying He, [3]Guohui Ding, [4]Chuan Wang, [5]Lu Xie, [6]Yixue Li [Full author list]Nucleic Acids Research [missing]DOI: 10.1093/NAR/GKP933 [ORCID]
PubMed: 19900968 [ORCID]
database [missing]2009-11-09
The combination approach of SVM and ECOC for powerful identification and classification of transcription factor[1]Guangyong Zheng, [2]Ziliang Qian, [3]Qing Yang, [4]Chaochun Wei, [5]Lu Xie, [6]Yangyong Zhu, [7]Yixue Li [Full author list]BMC Bioinformatics [missing]DOI: 10.1186/1471-2105-9-282 [ORCID]
PubMed: 18554421 [ORCID]
2008-06-16

Group #5

TitleAuthors (identified)Published InIdentifier(s)TopicPublished DateMatch?
Novel biomarkers for pre-diabetes identified by metabolomics[1]Rui Wang-Sattler, [2]Zhonghao Yu, [3]Christian Herder, [4]Ana C Messias, [5]Anna Floegel, [6]Ying He, [7]Katharina Heim, [8]Monica Campillos, [9]Christina Holzapfel, [10]Barbara Thorand, ..., [20]Werner Roemisch-Margl, [21]Maren Carstensen-Kirberg, [22]Lu Xie, [23]Hisami Yamanaka-Okumura, [24]Guihong Xing, ... [Full author list]Molecular Systems Biology [missing]DOI: 10.1038/MSB.2012.43 [ORCID]
PubMed: 23010998 [ORCID]
biomarker [missing]; metabolomics [missing]2012-01-01
dbDEPC 2.0: updated database of differentially expressed proteins in human cancers[1]Ying He, [2]Menghuan Zhang, [3]Yuanhu Ju, [4]Zhonghao Yu, [5]Daqing Lv, [6]Han Sun, [7]Weilan Yuan, [8]Fei He, [9]Jianshe Zhang, [10]Hong Li, [11]Jing Li, [12]Rui Wang-Sattler, [13]Yixue Li, [14]Guoqing Zhang, [15]Lu Xie [Full author list]Nucleic Acids Research [missing]DOI: 10.1093/NAR/GKR936 [ORCID]
PubMed: 22096234 [ORCID]
2011-11-16
Differences between human plasma and serum metabolite profiles[1]Zhonghao Yu, [2]Gabi Kastenmüller, [3]Ying He, [4]Petra Belcredi, [5]Gabriele Möller, [6]Cornelia Prehn, [7]Joaquim Mendes, [8]Simone Wahl, [9]Werner Roemisch-Margl, [10]Uta Ceglarek, ..., [12]Norbert Dahmen, [13]Holger Prokisch, [14]Lu Xie, [15]Yixue Li, [16]Heinz Erich Wichmann, ... [Full author list]PLOS One [missing]DOI: 10.1371/JOURNAL.PONE.0021230 [ORCID]
PubMed: 21760889 [ORCID]
2011-07-08
PAnnBuilder: an R package for assembling proteomic annotation data[1]Hong Li, [2]Guohui Ding, [3]Lu Xie, [4]Yixue Li [Full author list]Bioinformatics [missing]DOI: 10.1093/BIOINFORMATICS/BTP100 [ORCID]
PubMed: 19237448 [ORCID]
R package [missing]2009-02-23

Misc

Matched potential author: Lu Xie - author of 6 items
Matched potential author: Lu Xie - author of 4 items
Matched potential author: Lu Xie - author of 1 items
Warning: Multiple potential authors match this cluster!
TitleAuthors (identified)Published InIdentifier(s)TopicPublished DateMatch?
Genomic and transcriptomic analyses reveal distinct biological functions for cold shock proteins (VpaCspA and VpaCspD) in Vibrio parahaemolyticus CHN25 during low-temperature survival[1]Chunhua Zhu, [2]Boyi Sun, [3]Taigang Liu, [4]Huajun Zheng, [5]Wenyi Gu, [6]Wei He, [7]Fengjiao Sun, [8]Yaping Wang, [9]Meicheng Yang, [10]Weicheng Bei, [11]Xu Peng, [12]Qunxin She, [13]Lu Xie, [14]Lanming Chen [Full author list]BMC Genomics [missing]DOI: 10.1186/S12864-017-3784-5 [ORCID]
PubMed: 28583064 [ORCID]
Vibrio parahaemolyticus [missing]; transcriptome [missing]2017-06-05
Motif-Based Text Mining of Microbial Metagenome Redundancy Profiling Data for Disease Classification[1]Yin Wang, [2]Rudong Li, [3]Yuhua Zhou, [4]Zong-Xin Ling, [5]Xiaokui Guo, [6]Lu Xie, [7]Lei Liu [Full author list]BioMed Research International [missing]DOI: 10.1155/2016/6598307 [ORCID]
PubMed: 27057545 [ORCID]
text mining [missing]2016-02-14
Metagenomic sequencing of bile from gallstone patients to identify different microbial community patterns and novel biliary bacteria[1]Hongzhang Shen, [2]Fuqiang Ye, [3]Lu Xie, [4]Jianfeng Yang, [5]Zhen Li, [6]Peisong Xu, [7]Fei Meng, [8]Lei Li, [9]Ying Chen, [10]Xiaochen Bo, [11]Ming Ni, [12]Xiaofeng Zhang [Full author list]Scientific Reports [missing]DOI: 10.1038/SREP17450 [ORCID]
PubMed: 26625708 [ORCID]
metagenomics [missing]2015-12-02
Mesenchymal chondrosarcoma of bone and soft tissue: a systematic review of 107 patients in the past 20 years[1]Jie Xu, [2]Dasen Li, [3]Lu Xie, [4]Shun Tang, [5]Wei Guo [Full author list]PLOS One [missing]DOI: 10.1371/JOURNAL.PONE.0122216 [ORCID]
PubMed: 25849226 [ORCID]
sarcoma [missing]; chondrosarcoma [missing]; bone neoplasm [missing]; systematic review [missing]; mesenchymal chondrosarcoma [missing]; soft tissue neoplasm [missing]; pediatric mesenchymal chondrosarcoma [missing]2015-04-07Lu Xie (Q89538273; 4 items)
The Structural Characterization of Tumor Fusion Genes and Proteins[1]Dandan Wang, [2]Daixi Li, [3]Guangrong Qin, [4]Wen Zhang, [5]Jian Ouyang, [6]Menghuan Zhang, [7]Lu Xie [Full author list]Computational and Mathematical Methods in Medicine [missing]DOI: 10.1155/2015/912742 [ORCID]
PubMed: 26347798 [ORCID]
2015-01-01
A meta-analysis of the association of glutathione S-transferase P1 gene polymorphism with the susceptibility of breast cancer[1]Jun-Jie Liu, [2]Jin-Lu Liu, [3]Xing Zhang, [4]Lu Xie, [5]Jian Zeng [Full author list]Molecular Biology Reports [missing]DOI: 10.1007/S11033-012-2396-Z [ORCID]
PubMed: 23334471 [ORCID]
meta-analysis [missing]2013-01-19
Optical signature of symmetry variations and spin-valley coupling in atomically thin tungsten dichalcogenides[1]Hualing Zeng, [2]Gui-Bin Liu, [3]Junfeng Dai, [4]Yajun Yan, [5]Bairen Zhu, [6]Ruicong He, [7]Lu Xie, [8]Shijie Xu, [9]Xianhui Chen, [10]Wang Yao, [11]Xiaodong Cui [Full author list]Scientific Reports [missing]DOI: 10.1038/SREP01608 [ORCID]
PubMed: 23575911 [ORCID]
tungsten [missing]2013-01-01
Web-based interrogation of gene expression signatures using EXALT.[1]Jun Wu, [2]Qingchao Qiu, [3]Lu Xie, [4]Joseph Fullerton, [5]Jian Yu, [6]Yu Shyr, [7]Alfred L George, [8]Yajun Yi [Full author list]BMC Bioinformatics [missing]DOI: 10.1186/1471-2105-10-420 [ORCID]
PubMed: 20003458 [ORCID]
2009-12-14
A platform to standardize, store, and visualize proteomics experimental data[1]Guangyong Zheng, [2]Hong Li, [3]Chuan Wang, [4]Quanhu Sheng, [5]Haiwei Fan, [6]Shaoyou Yang, [7]Boshu Liu, [8]Jianliang Dai, [9]Rong Zeng, [10]Lu Xie [Full author list]Acta Biochimica et Biophysica Sinica [missing]DOI: 10.1093/ABBS/GMP010 [ORCID]
PubMed: 19352541 [ORCID]
2009-04-01

Potential author items

NameDescriptionAuthored itemsIdentifiersEmployer(s)
Lu Xieresearcher ORCID ID = 0000-0002-0012-292710ORCID: 0000-0002-0012-2927
Lu Xieresearcher (ORCID 0000-0001-7541-2243)6ORCID: 0000-0001-7541-2243
Shanghai Center For Bioinformation Technology [missing]
Vanderbilt University [missing]
Central South University [missing]
Lu Xieresearcher (ORCID 0000-0001-7241-1915)4ORCID: 0000-0001-7241-1915
Peking University People's Hospital [missing]
Lu Xieresearcher ORCID ID = 0000-0003-2773-26931ORCID: 0000-0003-2773-2693
Lu Xieresearcher (ORCID 0000-0003-0721-2981)1ORCID: 0000-0003-0721-2981
Lu Xieresearcher (ORCID 0000-0003-2645-6439)1ORCID: 0000-0003-2645-6439
Lu Xieresearcher ORCID 0000-0002-1267-258X1ORCID: 0000-0002-1267-258X
Lu XiChancellors under Emperor Xizong of Tang0
Lu XieSong dynasty person CBDB=154040
Lu XieTang dynasty person CBDB = 1787660
Lu XieTang dynasty person CBDB = 1789670
Lu Xieperson, CBDB = 1790550
Lu XieMing dynasty person CBDB = 2646220
Lu XieTang dynasty person CBDB = 1793950
Lu XieTang dynasty person CBDB = 1869370
Lu Xieperson, CBDB ID = 4166440
Lu Xieperson, CBDB ID = 3786810
Lu Xieperson, CBDB ID = 4409260
Lu XiePh.D. The George Washington University 20130George Washington University [missing]
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