| Title | Authors (identified) | Published In | Identifier(s) | Topic | Published Date | Match? |
|---|
| The LncRNA Connectivity Map: Using LncRNA Signatures to Connect Small Molecules, LncRNAs, and Diseases | [1]Haixiu Yang, [2]Desi Shang, [3]Yanjun Xu, [4]Chunlong Zhang, [5]Li Feng, [6]Zeguo Sun, [7]Xinrui Shi, [8]Yunpeng Zhang, [9]Junwei Han, [10]Fei Su, [11]Chunquan Li, [12]Xia Li [Full author list] | Scientific Reports [missing] | DOI: 10.1038/S41598-017-06897-3 [ORCID]
PubMed: 28751672 [ORCID]
| | 2017-07-27 | |
| The landscape of DNA methylation-mediated regulation of long non-coding RNAs in breast cancer | [1]Chunlong Zhang, [2]Xinyu Wang, [3]Xuecang Li, [4]Ning Zhao, [5]Yihan Wang, [6]Xiaole Han, [7]Ce Ci, [8]Jian Zhang, [9]Meng Li, [10]Yan Zhang [Full author list] | Oncotarget [missing] | DOI: 10.18632/ONCOTARGET.17705 [ORCID]
PubMed: 28881636 [ORCID]
| DNA methylation [missing] | 2017-05-08 | |
| LncRNAs2Pathways: Identifying the pathways influenced by a set of lncRNAs of interest based on a global network propagation method | [1]Junwei Han, [2]Siyao Liu, [3]Zeguo Sun, [4]Yunpeng Zhang, [5]Fan Zhang, [6]Chunlong Zhang, [7]Desi Shang, [8]Haixiu Yang, [9]Fei Su, [10]Yanjun Xu, [11]Chunquan Li, [12]Huan Ren, [13]Xia Li [Full author list] | Scientific Reports [missing] | DOI: 10.1038/SREP46566 [ORCID]
PubMed: 28425476 [ORCID]
| | 2017-04-20 | |
| LncSubpathway: a novel approach for identifying dysfunctional subpathways associated with risk lncRNAs by integrating lncRNA and mRNA expression profiles and pathway topologies | [1]Yanjun Xu, [2]Feng Li, [3]Tan Wu, [4]Yingqi Xu, [5]Haixiu Yang, [6]Qun Dong, [7]Meiyu Zheng, [8]Desi Shang, [9]Chunlong Zhang, [10]Yunpeng Zhang, [11]Xia Li [Full author list] | Oncotarget [missing] | DOI: 10.18632/ONCOTARGET.14973 [ORCID]
PubMed: 28152521 [ORCID]
| | 2017-02-01 | |
| Subpathway-LNCE: Identify dysfunctional subpathways competitively regulated by lncRNAs through integrating lncRNA-mRNA expression profile and pathway topologies | [1]Xinrui Shi, [2]Yanjun Xu, [3]Chunlong Zhang, [4]Li Feng, [5]Zeguo Sun, [6]Junwei Han, [7]Fei Su, [8]Yunpeng Zhang, [9]Chunquan Li, [10]Xia Li [Full author list] | Oncotarget [missing] | DOI: 10.18632/ONCOTARGET.12005 [ORCID]
PubMed: 27634882 [ORCID]
| | 2016-09-13 | |
| Identification of a lncRNA involved functional module for esophageal cancer subtypes | [1]Shang Li, [2]Yanjun Xu, [3]Zeguo Sun, [4]Li Feng, [5]Desi Shang, [6]Chunlong Zhang, [7]Xinrui Shi, [8]Junwei Han, [9]Fei Su, [10]Haixiu Yang, [11]Jianmei Zhao, [12]Chao Song, [13]Yunpeng Zhang, [14]Chunquan Li, [15]Xia Li [Full author list] | Molecular BioSystems [missing] | DOI: 10.1039/C6MB00101G [ORCID]
PubMed: 27539139 [ORCID]
| esophageal cancer [missing] | 2016-08-19 | |
| MiRSEA: Discovering the pathways regulated by dysfunctional MicroRNAs | [1]Junwei Han, [2]Siyao Liu, [3]Yunpeng Zhang, [4]Yanjun Xu, [5]Ying Jiang, [6]Chunlong Zhang, [7]Chunquan Li, [8]Xia Li [Full author list] | Oncotarget [missing] | DOI: 10.18632/ONCOTARGET.10839 [ORCID]
PubMed: 27474169 [ORCID]
| microRNA [missing] | 2016-07-26 | |
| Global Prioritization of Disease Candidate Metabolites Based on a Multi-omics Composite Network | [1]Qianlan Yao, [2]Yanjun Xu, [3]Haixiu Yang, [4]Desi Shang, [5]Chunlong Zhang, [6]Yunpeng Zhang, [7]Zeguo Sun, [8]Xinrui Shi, [9]Li Feng, [10]Junwei Han, [11]Fei Su, [12]Chunquan Li, [13]Xia Li [Full author list] | Scientific Reports [missing] | DOI: 10.1038/SREP17201 [ORCID]
PubMed: 26598063 [ORCID]
| prioritization [missing] | 2015-11-24 | |
| Subpathway-GMir: identifying miRNA-mediated metabolic subpathways by integrating condition-specific genes, microRNAs, and pathway topologies | [1]Li Feng, [2]Yanjun Xu, [3]Yunpeng Zhang, [4]Zeguo Sun, [5]Junwei Han, [6]Chunlong Zhang, [7]Haixiu Yang, [8]Desi Shang, [9]Fei Su, [10]Xinrui Shi, [11]Shang Li, [12]Chunquan Li, [13]Xia Li [Full author list] | Oncotarget [missing] | DOI: 10.18632/ONCOTARGET.5341 [ORCID]
PubMed: 26472186 [ORCID]
| microRNA [missing] | 2015-10-12 | |
| Topologically inferring pathway activity toward precise cancer classification via integrating genomic and metabolomic data: prostate cancer as a case | [1]Wei Liu, [2]Xuefeng Bai, [3]Yuejuan Liu, [4]Wei Wang, [5]Junwei Han, [6]Qiuyu Wang, [7]Yanjun Xu, [8]Chunlong Zhang, [9]Shihua Zhang, [10]Xuecang Li, [11]Zhonggui Ren, [12]Jian Zhang, [13]Chunquan Li [Full author list] | Scientific Reports [missing] | DOI: 10.1038/SREP13192 [ORCID]
PubMed: 26286638 [ORCID]
| prostate cancer [missing] | 2015-08-19 | |
| ESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis | [1]Junwei Han, [2]Xinrui Shi, [3]Yunpeng Zhang, [4]Yanjun Xu, [5]Ying Jiang, [6]Chunlong Zhang, [7]Li Feng, [8]Haixiu Yang, [9]Desi Shang, [10]Zeguo Sun, [11]Fei Su, [12]Chunquan Li, [13]Xia Li [Full author list] | Scientific Reports [missing] | DOI: 10.1038/SREP13044 [ORCID]
PubMed: 26267116 [ORCID]
| | 2015-08-12 | |
| Integration of pathway structure information into a reweighted partial Cox regression approach for survival analysis on high-dimensional gene expression data | [1]Wei Liu, [2]Qiuyu Wang, [3]Jianmei Zhao, [4]Chunlong Zhang, [5]Yuejuan Liu, [6]Jian Zhang, [7]Xuefeng Bai, [8]Xuecang Li, [9]Houming Feng, [10]Mingzhi Liao, [11]Wei Wang, [12]Chunquan Li [Full author list] | Molecular BioSystems [missing] | DOI: 10.1039/C5MB00044K [ORCID]
PubMed: 25891149 [ORCID]
| | 2015-06-01 | |
| Integrative analysis of lung development-cancer expression associations reveals the roles of signatures with inverse expression patterns | [1]Chunlong Zhang, [2]Chunquan Li, [3]Yanjun Xu, [4]Li Feng, [5]Desi Shang, [6]Xinmiao Yang, [7]Junwei Han, [8]Zeguo Sun, [9]Yixue Li, [10]Xia Li [Full author list] | Molecular BioSystems [missing] | DOI: 10.1039/C5MB00061K [ORCID]
PubMed: 25720795 [ORCID]
| | 2015-05-01 | |
| Identification of subtype specific miRNA-mRNA functional regulatory modules in matched miRNA-mRNA expression data: multiple myeloma as a case | [1]Yunpeng Zhang, [2]Wei Liu, [3]Yanjun Xu, [4]Chunquan Li, [5]Yingying Wang, [6]Haixiu Yang, [7]Chunlong Zhang, [8]Fei Su, [9]Yixue Li, [10]Xia Li [Full author list] | BioMed Research International [missing] | DOI: 10.1155/2015/501262 [ORCID]
PubMed: 25874214 [ORCID]
| | 2015-03-19 | |
| A novel dysregulated pathway-identification analysis based on global influence of within-pathway effects and crosstalk between pathways | [1]Junwei Han, [2]Chunquan Li, [3]Haixiu Yang, [4]Yanjun Xu, [5]Chunlong Zhang, [6]Jiquan Ma, [7]Xinrui Shi, [8]Wei Liu, [9]Desi Shang, [10]Qianlan Yao, [11]Yunpeng Zhang, [12]Fei Su, [13]Li Feng, [14]Xia Li [Full author list] | Journal of the Royal Society Interface [missing] | DOI: 10.1098/RSIF.2014.0937 [ORCID]
PubMed: 25551156 [ORCID]
| | 2015-01-01 | |
| Prioritizing candidate disease metabolites based on global functional relationships between metabolites in the context of metabolic pathways | [1]Desi Shang, [2]Chunquan Li, [3]Qianlan Yao, [4]Haixiu Yang, [5]Yanjun Xu, [6]Junwei Han, [7]Jing Li, [8]Fei Su, [9]Yunpeng Zhang, [10]Chunlong Zhang, [11]Dongguo Li, [12]Xia Li [Full author list] | PLOS One [missing] | DOI: 10.1371/JOURNAL.PONE.0104934 [ORCID]
PubMed: 25153931 [ORCID]
| prioritization [missing] | 2014-08-25 | |
| MPINet: metabolite pathway identification via coupling of global metabolite network structure and metabolomic profile | [1]Feng Li, [2]Yanjun Xu, [3]Desi Shang, [4]Haixiu Yang, [5]Wei Liu, [6]Junwei Han, [7]Zeguo Sun, [8]Qianlan Yao, [9]Chunlong Zhang, [10]Jiquan Ma, [11]Fei Su, [12]Li Feng, [13]Xinrui Shi, [14]Yunpeng Zhang, [15]Jing Li, [16]Qi Gu, [17]Xia Li, [18]Chunquan Li [Full author list] | BioMed Research International [missing] | DOI: 10.1155/2014/325697 [ORCID]
PubMed: 25057481 [ORCID]
| metabolomic profile [missing] | 2014-06-25 | |
| Identification of miRNA-mediated core gene module for glioma patient prediction by integrating high-throughput miRNA, mRNA expression and pathway structure | [1]Chunlong Zhang, [2]Chunquan Li, [3]Jing Li, [4]Junwei Han, [5]Desi Shang, [6]Yunpeng Zhang, [7]Wei Zhang, [8]Qianlan Yao, [9]Lei Han, [10]Yanjun Xu, [11]Wei Yan, [12]Zhaoshi Bao, [13]Gan You, [14]Tao Jiang, [15]Chunsheng Kang, [16]Xia Li [Full author list] | PLOS One [missing] | DOI: 10.1371/JOURNAL.PONE.0096908 [ORCID]
PubMed: 24809850 [ORCID]
| patient [missing] | 2014-05-08 | |
| Functional combination strategy for prioritization of human miRNA target | [1]Jing Li, [2]Yunpeng Zhang, [3]Yingying Wang, [4]Chunlong Zhang, [5]Qiuyu Wang, [6]Xinrui Shi, [7]Chunquan Li, [8]Ruijie Zhang, [9]Xia Li [Full author list] | Gene [missing] | DOI: 10.1016/J.GENE.2013.09.106 [ORCID]
PubMed: 24100082 [ORCID]
| prioritization [missing] | 2013-10-04 | |
| Topologically inferring risk-active pathways toward precise cancer classification by directed random walk | [1]Wei Liu, [2]Chunquan Li, [3]Yanjun Xu, [4]Haixiu Yang, [5]Qianlan Yao, [6]Junwei Han, [7]Desi Shang, [8]Chunlong Zhang, [9]Fei Su, [10]Xiaoxi Li, [11]Yun Xiao, [12]Fan Zhang, [13]Meng Dai, [14]Xia Li [Full author list] | Bioinformatics [missing] | DOI: 10.1093/BIOINFORMATICS/BTT373 [ORCID]
PubMed: 23842813 [ORCID]
| | 2013-07-10 | |
| Subpathway-GM: identification of metabolic subpathways via joint power of interesting genes and metabolites and their topologies within pathways | [1]Chunquan Li, [2]Junwei Han, [3]Qianlan Yao, [4]Chendan Zou, [5]Yanjun Xu, [6]Chunlong Zhang, [7]Desi Shang, [8]Lingyun Zhou, [9]Chaoxia Zou, [10]Zeguo Sun, [11]Jing Li, [12]Yunpeng Zhang, [13]Haixiu Yang, [14]Xu Gao, [15]Xia Li [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKT161 [ORCID]
PubMed: 23482392 [ORCID]
| | 2013-03-12 | |
| Identifying disease related sub-pathways for analysis of genome-wide association studies | [1]Chunquan Li, [2]Junwei Han, [3]Desi Shang, [4]Jing Li, [5]Yan Wang, [6]Yingying Wang, [7]Yunpeng Zhang, [8]Qianlan Yao, [9]Chunlong Zhang, [10]Kongning Li, [11]Xia Li [Full author list] | Gene [missing] | DOI: 10.1016/J.GENE.2012.04.051 [ORCID]
PubMed: 22565193 [ORCID]
| genome-wide association study [missing] | 2012-04-30 | |
| Characterizing the network of drugs and their affected metabolic subpathways | [1]Chunquan Li, [2]Desi Shang, [3]Yan Wang, [4]Jing Li, [5]Junwei Han, [6]Shuyuan Wang, [7]Qianlan Yao, [8]Yingying Wang, [9]Yunpeng Zhang, [10]Chunlong Zhang, [11]Yanjun Xu, [12]Wei Jiang, [13]Xia Li [Full author list] | PLOS One [missing] | DOI: 10.1371/JOURNAL.PONE.0047326 [ORCID]
PubMed: 23112813 [ORCID]
| | 2012-01-01 | |