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Magali Ruffier

Wikidata Item | Scholia Profile [curation] | Reasonator | SQID

Listed Publications

20 publications found

TitleAuthors (identified)Published InIdentifier(s)TopicPublished Date
Ensembl 2022[1]Fiona Cunningham, [2]James E Allen, [3]Jamie Allen, [4]Jorge Alvarez-Jarreta, [5]M Ridwan Amode, [6]Irina Armean, [7]Olanrewaju Austine-Orimoloye, [8]Andrey G Azov, [9]If Barnes, [10]Ruth Bennett, ..., [84]Matthieu Muffato, [85]Emily Pritchard, [86]Magali Ruffier, [87]John Tate, [88]David Thybert, ... [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKAB1049
2021-10-19
Ensembl 2020[1]Andrew D Yates, [2]Premanand Achuthan, [3]Wasiu Akanni, [4]James E Allen, [5]Jamie Allen, [6]Jorge Alvarez-Jarreta, [7]M Ridwan Amode, [8]Irina Armean, [9]Andrey G Azov, [10]Ruth Bennett, ..., [69]Matthieu Muffato, [70]Emily Perry, [71]Magali Ruffier, [72]Stephen Trevanion, [73]Fiona Cunningham, ... [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKZ966
PubMed: 31691826		2020-01-01
GENCODE reference annotation for the human and mouse genomes[1]Adam Frankish, [2]Mark Diekhans, [3]Anne-Maud Ferreira, [4]Rory Johnson, [5]Irwin Jungreis, [6]Jane E Loveland, [7]Jonathan M Mudge, [8]Cristina Sisu, [9]James C Wright, [10]Joel Armstrong, ..., [34]Baikang Pei, [35]Fernando Pozo, [36]Magali Ruffier, [37]Bianca M Schmitt, [38]Eloise Stapleton, ... [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKY955
PubMed: 30357393		2019-01-01
Ensembl 2019[1]Fiona Cunningham, [2]Premanand Achuthan, [3]Wasiu Akanni, [4]James E Allen, [5]M Ridwan Amode, [6]Irina Armean, [7]Ruth Bennett, [8]Jyothish Bhai, [9]Konstantinos Billis, [10]Sanjay Boddu, ..., [60]Matthieu Muffato, [61]Emily Pritchard, [62]Magali Ruffier, [63]Daniel M Staines, [64]Stephen Trevanion, ... [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKY1113
PubMed: 30407521		2019-01-01
A comprehensive genomic history of extinct and living elephants.[1]Eleftheria Palkopoulou, [2]Mark Lipson, [3]Swapan Mallick, [4]Svend Nielsen, [5]Nadin Rohland, [6]Sina Baleka, [7]Emil Karpinski, [8]Atma M Ivancevic, [9]Thu-Hien To, [10]Robert Daniel Kortschak, ..., [24]Christina Williams, [25]Bronwen L Aken, [26]Magali Ruffier, [27]Elinor Karlsson, [28]Jeremy Johnson, ... [Full author list]Proceedings of the National Academy of Sciences of the United States of America [curation]DOI: 10.1073/PNAS.1720554115
PubMed: 29483247		2018-02-26
Ensembl 2018[1]Daniel R Zerbino, [2]Premanand Achuthan, [3]Wasiu Akanni, [4]M Ridwan Amode, [5]Daniel Barrell, [6]Jyothish Bhai, [7]Konstantinos Billis, [8]Carla A Cummins, [9]Astrid Gall, [10]Carlos García Girón, ..., [49]Matthieu Muffato, [50]Emily Pritchard, [51]Magali Ruffier, [52]Daniel M Staines, [53]Stephen Trevanion, ... [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKX1098
PubMed: 29155950		2018-01-01
Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation[1]Magali Ruffier, [2]Andreas K Kähäri, [3]Monika Komorowska, [4]Stephen Keenan, [5]Matthew R Laird, [6]Ian Longden, [7]Glenn Proctor, [8]Steve Searle, [9]Daniel M Staines, [10]Kieron Taylor, [11]Alessandro Vullo, [12]Andrew D Yates, [13]Daniel R Zerbino, [14]Paul Flicek [Full author list]Database [curation]DOI: 10.1093/DATABASE/BAX020
PubMed: 28365736		Ensembl genome database project [curation]; genome annotation [curation]2017-01-01
Ensembl 2017[1]Bronwen Aken, [2]Premanand Achuthan, [3]Wasiu Akanni, [4]M Ridwan Amode, [5]Friederike Bernsdorff, [6]Jyothish Bhai, [7]Konstantinos Billis, [8]Denise Carvalho Silva, [9]Carla A Cummins, [10]Peter Clapham, ..., [42]Matthieu Muffato, [43]Emily Pritchard, [44]Magali Ruffier, [45]Daniel M Staines, [46]Stephen Trevanion, ... [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKW1104
PubMed: 27899575		2016-11-28
The Ensembl gene annotation system[1]Bronwen Aken, [2]Sarah Ayling, [3]Daniel Barrell, [4]Laura Clarke, [5]Valery Curwen, [6]Susan Fairley, [7]Julio Fernandez Banet, [8]Konstantinos Billis, [9]Carlos García Girón, [10]Thibaut Hourlier, ..., [15]Daniel N Murphy, [16]Rishi Nag, [17]Magali Ruffier, [18]Michael Schuster, [19]Y Amy Tang, ... [Full author list]Database [curation]DOI: 10.1093/DATABASE/BAW093
PubMed: 27337980		RNA sequencing [curation]2016-06-23
Ensembl 2016[1]Andrew D Yates, [2]Wasiu Akanni, [3]M Ridwan Amode, [4]Daniel Barrell, [5]Konstantinos Billis, [6]Denise Carvalho Silva, [7]Carla A Cummins, [8]Peter Clapham, [9]Stephen Fitzgerald, [10]Laurent Gil, ..., [39]Matthieu Muffato, [40]Emily Pritchard, [41]Magali Ruffier, [42]Giulietta Spudich, [43]Stephen Trevanion, ... [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKV1157
PubMed: 26687719		2015-12-19
Ensembl 2015[1]Fiona Cunningham, [2]M Ridwan Amode, [3]Daniel Barrell, [4]Kathryn Beal, [5]Konstantinos Billis, [6]Simon Brent, [7]Denise Carvalho Silva, [8]Peter Clapham, [9]Guy Coates, [10]Stephen Fitzgerald, ..., [41]Rhoda Kinsella, [42]Matthieu Muffato, [43]Magali Ruffier, [44]Stephen M J Searle, [45]Giulietta Spudich, ... [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKU1010
PubMed: 25352552		2014-10-28
The Ensembl REST API: Ensembl Data for Any Language[1]Andrew D Yates, [2]Kathryn Beal, [3]Stephen Keenan, [4]William M McLaren, [5]Miguel Pignatelli, [6]Graham R. S. Ritchie, [7]Magali Ruffier, [8]Kieron Taylor, [9]Alessandro Vullo, [10]Paul Flicek [Full author list]Bioinformatics [curation]DOI: 10.1093/BIOINFORMATICS/BTU613
PubMed: 25236461		Representational State Transfer [curation]2014-09-17
Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication[1]Miguel Carneiro, [2]Carl-Johan Rubin, [3]Federica Di Palma, [4]Frank W Albert, [5]Jessica Alföldi, [6]Alvaro Martinez Barrio, [7]Gerli Pielberg, [8]Nima Rafati, [9]Shumaila Sayyab, [10]Jason Turner-Maier, ..., [28]Guillaume Queney, [29]Claire Rogel-Gaillard, [30]Magali Ruffier, [31]Véronique Duranthon, [31-Q114324969]Steve Searle, [32]Rafael Villafuerte, ... [Full author list]Science [curation]DOI: 10.1126/SCIENCE.1253714
PubMed: 25170157		domestication [curation]; phenotypic change [curation]2014-08-01
Ensembl 2014[1]Paul Flicek, [2]M Ridwan Amode, [3]Daniel Barrell, [4]Kathryn Beal, [5]Konstantinos Billis, [6]Simon Brent, [7]Denise Carvalho-Silva, [8]Peter Clapham, [9]Guy Coates, [10]Stephen Fitzgerald, ..., [29]Emily Pritchard, [30]Harpreet Singh Riat, [31]Magali Ruffier, [32]Daniel J Sheppard, [33]Kieron Taylor, ... [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKT1196
PubMed: 24316576		2014-01-01
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution[1]Jeramiah J Smith, [2]Shigehiro Kuraku, [3]Carson Holt, [4]Tatjana Sauka-Spengler, [5]Ning Jiang, [6]Michael S Campbell, [7]Mark Yandell, [8]Tereza Manousaki, [9]Axel Meyer, [10]Ona Bloom, ..., [32]Paul Piccinelli, [33]Greg Elgar, [34]Magali Ruffier, [35]Bronwen Aken, [36]Stephen Searle, ... [Full author list]Nature Genetics [curation]DOI: 10.1038/NG.2568
PubMed: 23435085		sea lamprey [curation]2013-04-01
Ensembl 2013[1]Paul Flicek, [2]Ikhlak Ahmed, [3]M Ridwan Amode, [4]Daniel Barrell, [5]Kathryn Beal, [6]Simon Brent, [7]Denise Carvalho-Silva, [8]Peter Clapham, [9]Guy Coates, [10]Susan Fairley, ..., [31]Harpreet Singh Riat, [32]Graham R. S. Ritchie, [33]Magali Ruffier, [34]Michael Schuster, [35]Daniel J Sheppard, ... [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKS1236
PubMed: 23203987		2013-01-01
Ensembl 2012[1]Paul Flicek, [2]M Ridwan Amode, [3]Daniel Barrell, [4]Kathryn Beal, [5]Simon Brent, [7]Peter Clapham, [8]Guy Coates, [9]Susan Fairley, [10]Stephen Fitzgerald, ..., [56]Amonida Zadissa, [57]Stephen M J Searle, [57-Q55163293]Kieron Taylor, [58]Magali Ruffier [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKR991
PubMed: 22086963		2012-01-01
Ensembl 2011[1]Paul Flicek, [2]M Ridwan Amode, [3]Daniel Barrell, [4]Kathryn Beal, [5]Simon Brent, [6]Yuan Chen, [7]Peter Clapham, [8]Guy Coates, [9]Susan Fairley, [10]Stephen Fitzgerald, ..., [27]Daniel Rios, [28]Graham R. S. Ritchie, [29]Magali Ruffier, [30]Michael Schuster, [31]Daniel Sobral, ... [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKQ1064
PubMed: 21045057		2011-01-01
Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis[1]Rami A Dalloul, [2]Julie A Long, [3]Aleksey V. Zimin, [4]Luqman Aslam, [5]Kathryn Beal, [6]Le Ann Blomberg, [7]Pascal Bouffard, [8]David W Burt, [9]Oswald Crasta, [10]Richard P. M. A. Crooijmans, ..., [48]Dan Qioa, [49]Emanuele Raineri, [50]Magali Ruffier, [51]Steven Salzberg, [52]Michael C. Schatz, ... [Full author list]PLOS Biology [curation]DOI: 10.1371/JOURNAL.PBIO.1000475
PubMed: 20838655		Wild Turkey [curation]2010-01-01
Ensembl's 10th year[1]Paul Flicek, [2]Bronwen Aken, [3]Benoit Ballester, [4]Kathryn Beal, [5]Eugene Bragin, [6]Simon Brent, [7]Yuan Chen, [8]Peter Clapham, [9]Guy Coates, [10]Susan Fairley, ..., [33]Bethan Pritchard, [34]Daniel Rios, [35]Magali Ruffier, [36]Michael Schuster, [37]Guy Slater, ... [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKP972
PubMed: 19906699		2010-01-01
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