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Anders Riutta

Wikidata Item | Scholia Profile [curation] | Reasonator | SQID

Listed Publications

14 publications found

TitleAuthors (identified)Published InIdentifier(s)TopicPublished Date
WikiPathways 2024: next generation pathway database[1]Ayushi Agrawal, [2]Hasan Balcı, [3]Kristina Hanspers, [4]Susan Coort, [5]Marvin Martens, [6]Denise Slenter, [7]Friederike Ehrhart, [8]Daniela Digles, [9]Andra Waagmeester, [10]Isabel Wassink, ..., [15]Lars Willighagen, [16]Kozo Nishida, [17]Anders Riutta, [18]Helena Basaric, [19]Chris T. Evelo, ... [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKAD960
PubMed: 37941138		WikiPathways [curation]2023-11-06
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science[1]Deepak R. Unni, [2]Sierra Moxon, [3]Michael Bada, [4]Matthew Brush, [5]Richard Bruskiewich, [6]Paul A Clemons, [7]Paul A Clemons, [9]Karamarie Fecho, [10]Gustavo Glusman, ..., [8]Michel Dumontier, ..., [136]Shruti Raj, [137]Jason Reilly, [138]Anders Riutta, [139]Jared Roach, [14-Q22990398]Timothy Elliott Putman, [140]Ryan T. Roper, ... [Full author list]Clinical and Translational Science [curation]DOI: 10.1111/CTS.13302
knowledge graph of science [curation]2022-06-06
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms[1]Marek Ostaszewski, [2]Anna Niarakis, [3]Alexander Mazein, [4]Inna Kuperstein, [5]Robert Phair, [6]Aurelio Orta-Resendiz, [7]Vidisha Singh, [8]Sara Sadat Aghamiri, [9]Marcio Luis Acencio, [10]Enrico Glaab, ..., [76]Venkata Satagopam, [77]Guanming Wu, [78]Anders Riutta, [79]Martin Golebiewski, [80]Stuart Owen, ... [Full author list]Molecular Systems Biology [curation]DOI: 10.15252/MSB.202110387
PubMed: 34664389		SARS-CoV-2 [curation]; COVID-19 [curation]2021-10-19
WikiPathways: connecting communities[1]Marvin Martens, [2]Ammar Ammar, [3]Anders Riutta, [4]Andra Waagmeester, [5]Denise Slenter, [6]Kristina Hanspers, [7]Ryan Miller, [8]Daniela Digles, [9]Elisson N. Lopes, [10]Friederike Ehrhart, [11]Lauren J Dupuis, [12]Laurent Winckers, [13]Susan Coort, [14]Egon Willighagen, [15]Chris T. Evelo, [16]Alexander R. Pico, [17]Martina Summer-Kutmon [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKAA1024
PubMed: 33211851		collaboration [curation]; biological pathway [curation]; WikiPathways [curation]2021-01-08
Pathway information extracted from 25 years of pathway figures[1]Kristina Hanspers, [2]Anders Riutta, [3]Martina Summer-Kutmon, [4]Alexander R. Pico [Full author list]Genome Biology [curation]DOI: 10.1186/S13059-020-02181-2
PubMed: 33168034		2020-11-09
COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms[1]Marek Ostaszewski, [2]Anna Niarakis, [3]Alexander Mazein, [4]Inna Kuperstein, [5]Robert Phair, [6]Aurelio Orta-Resendiz, [7]Vidisha Singh, [8]Sara Sadat Aghamiri, [9]Marcio Luis Acencio, [10]Enrico Glaab, ..., [76]Venkata Satagopam, [77]Guanming Wu, [78]Anders Riutta, [79]Martin Golebiewski, [80]Stuart Owen, ... [Full author list]DOI: 10.1101/2020.10.26.356014
systems biology [curation]; SARS-CoV-2 [curation]; COVID-19 [curation]2020-10-28
Wikidata as a knowledge graph for the life sciences[1]Andra Waagmeester, [2]Gregory Stupp, [3]Sebastian Burgstaller-Muehlbacher, [4]Benjamin M. Good, [5]Malachi Griffith, [6]Obi Griffith, [7]Kristina Hanspers, [8]Henning Hermjakob, [9]Toby Hudson, [10]Kevin Hybiske, ..., [16]Alexander R. Pico, [17]Timothy Elliott Putman, [18]Anders Riutta, [19]Núria Queralt Rosinach, [20]Lynn Schriml, ... [Full author list]eLife [curation]DOI: 10.7554/ELIFE.52614
PubMed: 32180547		biology [curation]; Wikidata [curation]; ontology [curation]; life sciences [curation]; semantic interoperability [curation]; FAIR data [curation]; knowledge graph [curation]; knowledge graph of science [curation]2020-03-17
Author response: Wikidata as a knowledge graph for the life sciences[1]Andra Waagmeester, [2]Gregory Stupp, [3]Sebastian Burgstaller-Muehlbacher, [4]Benjamin M. Good, [5]Malachi Griffith, [6]Obi Griffith, [7]Kristina Hanspers, [8]Henning Hermjakob, [9]Toby Hudson, [10]Kevin Hybiske, ..., [16]Alexander R. Pico, [17]Timothy Elliott Putman, [18]Anders Riutta, [19]Núria Queralt Rosinach, [20]Lynn Schriml, ... [Full author list]eLife [curation]DOI: 10.7554/ELIFE.52614.SA2
Wikidata [curation]; life sciences [curation]2020-01-24
Wikidata as a FAIR knowledge graph for the life sciences[1]Andra Waagmeester, [2]Gregory Stupp, [3]Sebastian Burgstaller-Muehlbacher, [4]Benjamin M. Good, [5]Malachi Griffith, [6]Obi Griffith, [7]Kristina Hanspers, [8]Henning Hermjakob, [9]Toby Hudson, [10]Kevin Hybiske, ..., [16]Alexander R. Pico, [17]Timothy Elliott Putman, [18]Anders Riutta, [19]Núria Queralt Rosinach, [20]Lynn Schriml, ... [Full author list]DOI: 10.1101/799684
Wikidata [curation]; life sciences [curation]; knowledge graph [curation]; knowledge graph of science [curation]2019-10-21
exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids[1]Oscar D Murillo, [2]William Thistlethwaite, [3]Joel Rozowsky, [4]Sai Lakshmi Subramanian, [5]Rocco Lucero, [6]Neethu Shah, [7]Andrew R Jackson, [8]Srimeenakshi Srinivasan, [9]Allen Chung, [10]Clara D Laurent, ..., [15]Joshua A Welsh, [16]Kristina Hanspers, [17]Anders Riutta, [18]Sebastian Burgstaller-Muehlbacher, [19]Ravi V Shah, ... [Full author list]Cell [curation]DOI: 10.1016/J.CELL.2019.02.018
PubMed: 30951672		RNA analysis [curation]2019-04-01
Identifying Genes in Published Pathway Figure Images[1]Anders Riutta, [2]Kristina Hanspers, [3]Alexander R. Pico [Full author list]DOI: 10.1101/379446
2018-07-29
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research[1]Denise Slenter, [2]Martina Summer-Kutmon, [3]Kristina Hanspers, [4]Anders Riutta, [5]Jacob Windsor, [6]Nuno Nunes, [7]Jonathan Mélius, [8]Elisa Cirillo, [9]Susan Coort, [10]Daniela Digles, ..., [21-Q28530149]Alexander R. Pico, ..., [3-Q28865047]Kristina Hanspers [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKX1064
PubMed: 29136241		database [curation]; biological pathway [curation]; WikiPathways [curation]; metabolomics [curation]2018-01-04
Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources[1]Andra Waagmeester, [2]Martina Summer-Kutmon, [3]Anders Riutta, [4]Ryan Miller, [5]Egon Willighagen, [6]Chris T. Evelo, [7]Alexander R. Pico [Full author list]PLOS Computational Biology [curation]DOI: 10.1371/JOURNAL.PCBI.1004989
PubMed: 27336457		Semantic Web [curation]; SPARQL [curation]; WikiPathways [curation]2016-06-01
WikiPathways: capturing the full diversity of pathway knowledge[1]Martina Summer-Kutmon, [2]Anders Riutta, [3]Nuno Nunes, [4]Kristina Hanspers, [5]Egon Willighagen, [6]Anwesha Bohler, [7]Jonathan Mélius, [8]Andra Waagmeester, [9]Sravanthi R Sinha, [10]Ryan Miller, [11]Susan Coort, [12]Elisa Cirillo, [13]Bart Smeets, [14]Chris T. Evelo, [15]Alexander R. Pico [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKV1024
PubMed: 26481357		biological pathway [curation]; WikiPathways [curation]2016-01-04
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