( Log in to your Wikimedia account to use OAuth instead of Quickstatements for updates.)
Author Wikidata ID:
Additional SPARQL filters separated by semicolons (eg. for papers on Zika virus, enter wdt:P921 wd:Q202864):

Denise Slenter

Wikidata Item | Scholia Profile [curation] | Reasonator | SQID

Listed Publications

19 publications found

TitleAuthors (identified)Published InIdentifier(s)TopicPublished Date
Wikidata subsetting: Approaches, tools, and evaluation[1]Seyed Amir Hosseini Beghaeiraveri, [2]José Emilio Labra Gayo, [3]Andra Waagmeester, [4]Ammar Ammar, [5]Carolina Gonzalez, [6]Denise Slenter, [7]Sabah Ul-Hasan, [8]Egon Willighagen, [9]Fiona McNeill, [10]Alasdair J. G. Gray [Full author list]Semantic Web: Interoperability, Usability, Applicability [curation]DOI: 10.3233/SW-233491
Wikidata [curation]2023-12-27
WikiPathways 2024: next generation pathway database[1]Ayushi Agrawal, [2]Hasan Balcı, [3]Kristina Hanspers, [4]Susan Coort, [5]Marvin Martens, [6]Denise Slenter, [7]Friederike Ehrhart, [8]Daniela Digles, [9]Andra Waagmeester, [10]Isabel Wassink, ... [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKAD960
PubMed: 37941138		WikiPathways [curation]2023-11-06
Extending inherited metabolic disorder diagnostics with biomarker interaction visualizations[1]Denise Slenter, [2]Irene M. G. M. Hemel, [3]Chris T. Evelo, [4]Jörgen Bierau, [5]Egon Willighagen, [6]Laura Steinbusch [Full author list]Orphanet Journal of Rare Diseases [curation]DOI: 10.1186/S13023-023-02683-9
2023-04-26
Guiding the choice of informatics software and tools for lipidomics research applications[1]Zhixu Ni, [2]Michele Wölk, [3]Geoff Jukes, [4]Karla Mendivelso Espinosa, [5]Robert Ahrends, [6]Lucila Aimo, [7]Jorge Alvarez-Jarreta, [8]Simon Andrews, [9]Robert Andrews, [10]Alan J Bridge, ..., [25]Tomáš Pluskal, [26]Andrej Shevchenko, [27]Denise Slenter, [28]Gary Siuzdak, [29]Martina Summer-Kutmon, ... [Full author list]Nature Methods [curation]DOI: 10.1038/S41592-022-01710-0
software [curation]; database [curation]; lipidomics [curation]2022-12-21
BridgeDb and Wikidata: a powerful combination generating interoperable open research (BridgeDb)[1]Egon Willighagen, [2]Martina Summer-Kutmon, [3]Marvin Martens, [4]Denise Slenter [Full author list]Research Ideas and Outcomes [curation]DOI: 10.3897/RIO.8.E83031
Wikidata [curation]; BridgeDb [curation]2022-03-07
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms[1]Marek Ostaszewski, [2]Anna Niarakis, [3]Alexander Mazein, [4]Inna Kuperstein, [5]Robert Phair, [6]Aurelio Orta-Resendiz, [7]Vidisha Singh, [8]Sara Sadat Aghamiri, [9]Marcio Luis Acencio, [10]Enrico Glaab, ..., [54]Friederike Ehrhart, [55]Devasahayam Arokia Balaya Rex, [56]Denise Slenter, [57]Marvin Martens, [58]Nhung Pham, ... [Full author list]Molecular Systems Biology [curation]DOI: 10.15252/MSB.202110387
PubMed: 34664389		SARS-CoV-2 [curation]; COVID-19 [curation]2021-10-19
Ten simple rules for creating reusable pathway models for computational analysis and visualization[1]Kristina Hanspers, [2]Martina Summer-Kutmon, [3]Susan Coort, [4]Daniela Digles, [5]Lauren J Dupuis, [6]Friederike Ehrhart, [7]Finterly Hu, [8]Elisson N. Lopes, [9]Marvin Martens, [10]Nhung Pham, [11]Woosub Shin, [12]Denise Slenter, [13]Andra Waagmeester, [14]Egon Willighagen, [15]Laurent Winckers, [16]Chris T. Evelo, [17]Alexander R. Pico [Full author list]PLOS Computational Biology [curation]DOI: 10.1371/JOURNAL.PCBI.1009226
2021-08-19
Interpreting the lipidome: bioinformatic approaches to embrace the complexity[1]Jennifer Kyle, [2]Lucila Aimo, [3]Alan J Bridge, [4]Geremy Clair, [5]Maria Fedorova, [6]Bernd Helms, [7]Martijn R Molenaar, [8]Zhixu Ni, [9]Matej Orešič, [10]Denise Slenter, [11]Egon Willighagen, [12]Bobbie-Jo Webb-Robertson [Full author list]Metabolomics [curation]DOI: 10.1007/S11306-021-01802-6
bioinformatics [curation]; lipidomics [curation]2021-06-06
Knowledge graphs and wikidata subsetting[1]José Emilio Labra Gayo, [2]Alejandro González Hevia, [3]Daniel Fernández-Álvarez, [4]Ammar Ammar, [5]Dan Brickley, [6]Alasdair J. G. Gray, [7]Eric G. Prud'hommeaux, [8]Denise Slenter, [9]Harold Solbrig, [10]Seyed Amir Hosseini Beghaeiraveri, [11]Benno Fünkfstük, [12]Andra Waagmeester, [13]Egon Willighagen, [14]Liza Ovchinnikova, [15]Guillermo Benjaminsen, [16]Roberto García González, [17]Leyla Garcia, [18]Daniel Mietchen [Full author list]BioHackrXiv [curation], BioHackathon Europe 2020 Reports [curation]DOI: 10.37044/OSF.IO/WU9ET
Wikidata [curation]; knowledge graph [curation]2021-04-02
WikiPathways: connecting communities[1]Marvin Martens, [2]Ammar Ammar, [3]Anders Riutta, [4]Andra Waagmeester, [5]Denise Slenter, [6]Kristina Hanspers, [7]Ryan Miller, [8]Daniela Digles, [9]Elisson N. Lopes, [10]Friederike Ehrhart, [11]Lauren J Dupuis, [12]Laurent Winckers, [13]Susan Coort, [14]Egon Willighagen, [15]Chris T. Evelo, [16]Alexander R. Pico, [17]Martina Summer-Kutmon [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKAA1024
PubMed: 33211851		collaboration [curation]; biological pathway [curation]; WikiPathways [curation]2021-01-08
COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms[1]Marek Ostaszewski, [2]Anna Niarakis, [3]Alexander Mazein, [4]Inna Kuperstein, [5]Robert Phair, [6]Aurelio Orta-Resendiz, [7]Vidisha Singh, [8]Sara Sadat Aghamiri, [9]Marcio Luis Acencio, [10]Enrico Glaab, ..., [54]Friederike Ehrhart, [55]D. A. B. Rex, [56]Denise Slenter, [57]Marvin Martens, [58]Nhung Pham, ... [Full author list]DOI: 10.1101/2020.10.26.356014
systems biology [curation]; SARS-CoV-2 [curation]; COVID-19 [curation]2020-10-28
Wikidata as a knowledge graph for the life sciences[1]Andra Waagmeester, [2]Gregory Stupp, [3]Sebastian Burgstaller-Muehlbacher, [4]Benjamin M. Good, [5]Malachi Griffith, [6]Obi Griffith, [7]Kristina Hanspers, [8]Henning Hermjakob, [9]Toby Hudson, [10]Kevin Hybiske, ..., [20]Lynn Schriml, [21]Thomas Shafee, [22]Denise Slenter, [23]Ralf Stephan, [24]Katherine Thornton, ... [Full author list]eLife [curation]DOI: 10.7554/ELIFE.52614
PubMed: 32180547		biology [curation]; Wikidata [curation]; ontology [curation]; life sciences [curation]; semantic interoperability [curation]; FAIR data [curation]; knowledge graph [curation]; knowledge graph of science [curation]2020-03-17
Author response: Wikidata as a knowledge graph for the life sciences[1]Andra Waagmeester, [2]Gregory Stupp, [3]Sebastian Burgstaller-Muehlbacher, [4]Benjamin M. Good, [5]Malachi Griffith, [6]Obi Griffith, [7]Kristina Hanspers, [8]Henning Hermjakob, [9]Toby Hudson, [10]Kevin Hybiske, ..., [20]Lynn Schriml, [21]Thomas Shafee, [22]Denise Slenter, [23]Ralf Stephan, [24]Katherine Thornton, ... [Full author list]eLife [curation]DOI: 10.7554/ELIFE.52614.SA2
Wikidata [curation]; life sciences [curation]2020-01-24
Utilizing the semantic web for kinetic modeling of metabolic disease pathways[1]Denise Slenter, [2]Egon Willighagen [Full author list]Archived Slidedecks and Posters of European RFMF Metabomeeting 2020 [curation]DOI: 10.6084/M9.FIGSHARE.11685684.V1
Semantic Web [curation]; enzyme kinetics [curation]; metabolic disease [curation]; biological pathway [curation]2020-01-22
Wikidata as a FAIR knowledge graph for the life sciences[1]Andra Waagmeester, [2]Gregory Stupp, [3]Sebastian Burgstaller-Muehlbacher, [4]Benjamin M. Good, [5]Malachi Griffith, [6]Obi Griffith, [7]Kristina Hanspers, [8]Henning Hermjakob, [9]Toby Hudson, [10]Kevin Hybiske, ..., [20]Lynn Schriml, [21]Thomas Shafee, [22]Denise Slenter, [23]Ralf Stephan, [24]Katherine Thornton, ... [Full author list]DOI: 10.1101/799684
Wikidata [curation]; life sciences [curation]; knowledge graph [curation]; knowledge graph of science [curation]2019-10-21
Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome[1]Ryan Miller, [2]Friederike Ehrhart, [3]Lars Eijssen, [4]Denise Slenter, [5]Leopold M G Curfs, [6]Chris T. Evelo, [7]Egon Willighagen, [8]Martina Summer-Kutmon [Full author list]Frontiers in Genetics [curation]DOI: 10.3389/FGENE.2019.00059
PubMed: 30847002		Rett syndrome [curation]; molecular medicine [curation]; pathway analysis [curation]2019-02-21
Wikidata and Scholia as a hub linking chemical knowledge[1]Egon Willighagen, [2]Denise Slenter, [3]Daniel Mietchen, [4]Chris T. Evelo, [5]Finn Årup Nielsen [Full author list]11th International Conference on Chemical Structures. Program & Abstracts [curation]DOI: 10.6084/M9.FIGSHARE.6356027.V1
Wikidata [curation]; chemistry [curation]; Scholia [curation]2018-05-01
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research[1]Denise Slenter, [2]Martina Summer-Kutmon, [3]Kristina Hanspers, [4]Anders Riutta, [5]Jacob Windsor, [6]Nuno Nunes, [7]Jonathan Mélius, [8]Elisa Cirillo, [9]Susan Coort, [10]Daniela Digles, ..., [21-Q28530149]Alexander R. Pico, ... [Full author list]Nucleic Acids Research [curation]DOI: 10.1093/NAR/GKX1064
PubMed: 29136241		database [curation]; biological pathway [curation]; WikiPathways [curation]; metabolomics [curation]2018-01-04
Bloodstain Pattern Analysis: implementation of a fluid dynamic model for position determination of victims[1]Nick Laan, [1-Q47542666]Nick Laan, [2]Karla G de Bruin, [3]Denise Slenter, [4]Julie Wilhelm, [5]Mark Jermy, [6]Daniel Bonn [Full author list]Scientific Reports [curation]DOI: 10.1038/SREP11461
PubMed: 26099070		fluid mechanics [curation]; forensic science [curation]; bloodstain pattern analysis [curation]2015-06-22
Correct Q number of author item for selected works.
NO replacement author: revert to author name strings

Common author items in these papers

Common names in these papers

Feedback
Source and documentation (at github)
Wikidata page