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Daniel J. Klionsky

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50 publications found

TitleAuthors (identified)Published InIdentifier(s)TopicPublished Date
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)[1]Daniel J. Klionsky, [2]Kotb Abdelmohsen, [3]Akihisa Abe, [4]Md Joynal Abedin, [5]Hagai Abeliovich, [6]Abraham Acevedo-Arozena, [7]Hiroaki Adachi, [8]Christopher M Adams, [9]Peter D Adams, [10]Khosrow Adeli, ... [Full author list]Autophagy [curation]DOI: 10.1080/15548627.2015.1100356
PubMed: 26799652		cell biology [curation]; autophagy [curation]2016-01-02
Rph1/KDM4 mediates nutrient-limitation signaling that leads to the transcriptional induction of autophagy[1]Amélie Bernard, [2]Meiyan Jin, [3]Patricia González-Rodríguez, [4]Jens Füllgrabe, [5]Elizabeth Delorme-Axford, [6]Steven K. Backues, [7]Bertrand Joseph, [8]Daniel J. Klionsky [Full author list]Current Biology [curation]DOI: 10.1016/J.CUB.2014.12.049
PubMed: 25660547		autophagy [curation]; negative regulation of gene expression [curation]; Lysine demethylase 4A [curation]; Rph1p YER169W [curation]; Protein kinase RIM15 YFL033C [curation]2015-03-02
Transcriptional regulation of ATG9 by the Pho23-Rpd3 complex modulates the frequency of autophagosome formation[1]Meiyan Jin, [2]Daniel J. Klionsky [Full author list]Autophagy [curation]DOI: 10.4161/AUTO.29641
PubMed: 25046109		autophagosome [curation]2014-09-01
The histone H4 lysine 16 acetyltransferase hMOF regulates the outcome of autophagy[1]Jens Füllgrabe, [2]Melinda A Lynch-Day, [3]Nina Heldring, [4]Wenbo Li, [5]Robert B Struijk, [6]Qi Ma, [7]Ola Hermanson, [8]Michael G Rosenfeld, [9]Daniel J. Klionsky, [10]Bertrand Joseph [Full author list]Nature [curation]DOI: 10.1038/NATURE12313
PubMed: 23863932		autophagy [curation]; regulation of autophagy [curation]; Lysine acetyltransferase 8 [curation]; Autophagy related 7 [curation]; Autophagy related 5 [curation]2013-08-22
Autophagic processes in yeast: mechanism, machinery and regulation[1]Fulvio Reggiori, [2]Daniel J. Klionsky [Full author list]Genetics [curation]DOI: 10.1534/GENETICS.112.149013
PubMed: 23733851		autophagy [curation]2013-06-01
Noncanonical E2 recruitment by the autophagy E1 revealed by Atg7–Atg3 and Atg7–Atg10 structures[1]Stephen E Kaiser, [2]Kai Mao, [3]Asad M Taherbhoy, [4]Shanshan Yu, [5]Jennifer L Olszewski, [6]David M Duda, [7]Igor Kurinov, [8]Alan Deng, [9]Timothy D Fenn, [10]Daniel J. Klionsky, [11]Brenda A Schulman [Full author list]Nature Structural & Molecular Biology [curation]DOI: 10.1038/NSMB.2415
PubMed: 23142976		autophagy [curation]; structural biology [curation]; Atg7p YHR171W [curation]; E2-like conjugating enzyme YLL042C [curation]; Ubiquitin-like protein ATG8 YBL078C [curation]; Atg3p YNR007C [curation]2012-12-01
Phosphatidylinositol 4-kinases are required for autophagic membrane trafficking[1]Ke Wang, [2]Zhifen Yang, [3]Xu Liu, [4]Kai Mao, [5]Usha Nair, [6]Daniel J. Klionsky [Full author list]Journal of Biological Chemistry [curation]DOI: 10.1074/JBC.M112.371591
PubMed: 22977244		cell biology [curation]; autophagy [curation]; 1-phosphatidylinositol 4-kinase STT4 YLR305C [curation]2012-11-02
Ume6 transcription factor is part of a signaling cascade that regulates autophagy[1]Clinton R Bartholomew, [2]Tsukasa Suzuki, [3]Zhou Du, [4]Steven K. Backues, [5]Meiyan Jin, [6]Melinda A Lynch-Day, [7]Midori Umekawa, [8]Avani Kamath, [9]Mantong Zhao, [10]Zhiping Xie, [11]Ken Inoki, [12]Daniel J. Klionsky [Full author list]Proceedings of the National Academy of Sciences of the United States of America [curation]DOI: 10.1073/PNAS.1200313109
PubMed: 22733735		autophagy [curation]; Protein kinase RIM15 YFL033C [curation]2012-07-10
Ksp1 kinase regulates autophagy via the target of rapamycin complex 1 (TORC1) pathway[1]Midori Umekawa, [2]Daniel J. Klionsky [Full author list]Journal of Biological Chemistry [curation]DOI: 10.1074/JBC.M112.344952
PubMed: 22447937		cell biology [curation]; sirolimus [curation]; autophagy [curation]; Putative serine/threonine protein kinase KSP1 YHR082C [curation]2012-05-11
Guidelines for the use and interpretation of assays for monitoring autophagy[1]Daniel J. Klionsky, [1160-Q38361109]Xuejun Wang, [2]Fábio Camargo Abdalla, [3]Hagai Abeliovich, [4]Robert T. Abraham, [5]Abraham Acevedo-Arozena, [6]Khosrow Adeli, [7]Lotta Agholme, [8]Maria Agnello, [9]Patrizia Agostinis, [10]Julio Aguirre-Ghiso, ... [Full author list]Autophagy [curation]DOI: 10.4161/AUTO.19496
PubMed: 22966490		autophagy [curation]; selective autophagy [curation]; process utilizing autophagic mechanism [curation]2012-04-01
Activation of autophagy is required for muscle homeostasis during physical exercise[1]Usha Nair, [2]Daniel J. Klionsky [Full author list]Autophagy [curation]DOI: 10.4161/AUTO.7.12.18315
PubMed: 22082869		cell biology [curation]; autophagy [curation]2011-12-01
A comprehensive glossary of autophagy-related molecules and processes (2nd edition)[1]Daniel J. Klionsky, [2]Eric H Baehrecke, [3]John H Brumell, [4]Charleen T. Chu, [5]Patrice Codogno, [6]Ana María Cuervo, [7]Jayanta Debnath, [8]Vojo Deretic, [9]Zvulun Elazar, [10]Eeva-Liisa Eskelinen, ... [Full author list]Autophagy [curation]DOI: 10.4161/AUTO.7.11.17661
PubMed: 21997368		cell biology [curation]; autophagy [curation]; selective autophagy [curation]; process utilizing autophagic mechanism [curation]2011-11-01
Aspartyl aminopeptidase is imported from the cytoplasm to the vacuole by selective autophagy in Saccharomyces cerevisiae[1]Masaki Yuga, [2]Katsuya Gomi, [3]Daniel J. Klionsky, [4]Takahiro Shintani [Full author list]Journal of Biological Chemistry [curation]DOI: 10.1074/JBC.M110.173906
PubMed: 21343297		cell biology [curation]; vacuole [curation]; autophagy [curation]; Saccharomyces cerevisiae [curation]; Aspartyl aminopeptidase YHR113W [curation]2011-04-15
Post-Golgi Sec proteins are required for autophagy in Saccharomyces cerevisiae[1]Jiefei Geng, [2]Usha Nair, [3]Kyoko Yasumura-Yorimitsu, [4]Daniel J. Klionsky [Full author list]Molecular Biology of the Cell [curation]DOI: 10.1091/MBC.E09-11-0969
PubMed: 20444978		cell biology [curation]; autophagy [curation]; Saccharomyces cerevisiae [curation]; Guanine nucleotide exchange factor SEC2 YNL272C [curation]; Rab family GTPase SEC4 YFL005W [curation]2010-07-01
Trs85 directs a Ypt1 GEF, TRAPPIII, to the phagophore to promote autophagy[1]Molly A Lynch-Day, [2]Deepali Bhandari, [3]Shekar Menon, [4]Ju Huang, [5]Huaqing Cai, [6]Clinton R Bartholomew, [7]John H Brumell, [8]Susan Ferro-Novick, [9]Daniel J. Klionsky [Full author list]Proceedings of the National Academy of Sciences of the United States of America [curation]DOI: 10.1073/PNAS.1000063107
PubMed: 20375281		autophagy [curation]; TRAPPIII protein complex [curation]; TRAPPII protein complex [curation]; TRAPPI protein complex [curation]; Trs33p YOR115C [curation]; TRAPP subunit TRS23 YDR246W [curation]; Trs85p YDR108W [curation]; TRAPP subunit TRS31 YDR472W [curation]; TRAPP subunit TRS20 YBR254C [curation]; Rab family GTPase YPT1 YFL038C [curation]; Trs65p YGR166W [curation]; Transport protein particle complex II subunit TRS130 YMR218C [curation]; TRAPP complex core subunit BET3 YKR068C [curation]; TRAPP subunit BET5 YML077W [curation]2010-04-27
The Cvt pathway as a model for selective autophagy[1]Melinda A Lynch-Day, [2]Daniel J. Klionsky [Full author list]FEBS Letters [curation]DOI: 10.1016/J.FEBSLET.2010.02.013
PubMed: 20146925		biophysics [curation]; cell biology [curation]; autophagy [curation]; structural biology [curation]2010-04-02
Mammalian autophagy: core molecular machinery and signaling regulation[1]Zhifen Yang, [2]Daniel J. Klionsky [Full author list]Current Opinion in Cell Biology [curation]DOI: 10.1016/J.CEB.2009.11.014
PubMed: 20034776		cell biology [curation]; autophagy [curation]2010-04-01
The conserved oligomeric Golgi complex is involved in double-membrane vesicle formation during autophagy[1]Wei-Lien Yen, [2]Takahiro Shintani, [3]Usha Nair, [4]Yang Cao, [5]Brian C Richardson, [6]Zhijian Li, [7]Frederick M Hughson, [8]Misuzu Baba, [9]Daniel J. Klionsky [Full author list]Journal of Cell Biology [curation]DOI: 10.1083/JCB.200904075
PubMed: 20065092		cell biology [curation]; autophagy [curation]; Cvt vesicle membrane [curation]; Golgi transport complex subunit COG3 YER157W [curation]; Golgi transport complex subunit COG8 YML071C [curation]; Golgi transport complex subunit COG2 YGR120C [curation]; Golgi transport complex subunit COG6 YNL041C [curation]; Golgi transport complex subunit COG1 YGL223C [curation]; Golgi transport complex subunit COG5 YNL051W [curation]; Golgi transport complex subunit COG7 YGL005C [curation]; Golgi transport complex subunit COG4 YPR105C [curation]2010-01-11
Atg32 is a mitochondrial protein that confers selectivity during mitophagy[1]Tomotake Kanki, [2]Ke Wang, [3]Yang Cao, [5]Daniel J. Klionsky [Full author list]Developmental Cell [curation]DOI: 10.1016/J.DEVCEL.2009.06.014
PubMed: 19619495		mitochondrion [curation]; Mitophagy protein ATG32 YIL146C [curation]2009-07-01
Self-interaction is critical for Atg9 transport and function at the phagophore assembly site during autophagy[1]Congcong He, [2]Misuzu Baba, [3]Yang Cao, [4]Daniel J. Klionsky [Full author list]Molecular Biology of the Cell [curation]DOI: 10.1091/MBC.E08-05-0544
PubMed: 18829864		cell biology [curation]; autophagy [curation]2008-12-01
The Atg8 and Atg12 ubiquitin-like conjugation systems in macroautophagy. 'Protein modifications: beyond the usual suspects' review series[1]Jiefei Geng, [2]Daniel J. Klionsky [Full author list]EMBO Reports [curation]DOI: 10.1038/EMBOR.2008.163
PubMed: 18704115		2008-09-01
Atg8 controls phagophore expansion during autophagosome formation[1]Zhiping Xie, [2]Usha Nair, [3]Daniel J. Klionsky [Full author list]Molecular Biology of the Cell [curation]DOI: 10.1091/MBC.E07-12-1292
PubMed: 18508918		cell biology [curation]; autophagosome [curation]2008-05-28
Arp2 links autophagic machinery with the actin cytoskeleton[1]Iryna Monastyrska, [2]Congcong He, [3]Jiefei Geng, [4]Adam D Hoppe, [5]Zhijian Li, [6]Daniel J. Klionsky [Full author list]Molecular Biology of the Cell [curation]DOI: 10.1091/MBC.E07-09-0892
PubMed: 18287533		cell biology [curation]; cytoskeleton [curation]; autophagy [curation]; actin cytoskeleton [curation]; Actin-related protein 2 YDL029W [curation]2008-05-01
Autophagy fights disease through cellular self-digestion[1]Mizushima Noboru, [2]Beth Levine, [3]Ana María Cuervo, [4]Daniel J. Klionsky [Full author list]Nature [curation]DOI: 10.1038/NATURE06639
PubMed: 18305538		autophagy [curation]2008-02-28
Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes[1]Daniel J. Klionsky, [10]Andrea Ballabio, [101-Q56334142]Masaaki Komatsu, ..., [114-Q114336789]Andrew P Lieberman, [115-Q88478171]Kah Leong Lim, [116-Q80315078]Fu-Cheng Lin, [117-Q96140156]Willisa Liou, [118-Q54309700]Leroy F. Liu, [119-Q114427976]Gabriel Lopez-Berestein, ..., [120-Q2919877]Carlos López Otín, [122-Q47824589]Kay F Macleod, [124-Q88435444]Wim Martinet, [126-Q87626502]Josef Mautner, [128-Q114404404]Alicia Meléndez, [129-Q57211701]Paul A.M. Michels, ..., [130-Q40058474]Giovanni Miotto, [132-Q15055172]Mizushima Noboru, [135-Q38547142]Paula I. Moreira, [138-Q88683231]Christian Münz, ..., [141-Q90965316]Thomas P Neufeld, [142-Q37828689]Ichizo Nishino, [145-Q84393541]Bernd Nürnberg, [146-Q61148391]Michinaga Ogawa, [147-Q116996889]Nancy L. Oleinick, [149-Q116996889]Nancy L. Oleinick, ..., [152-Q89798963]Issidora S Papassideri, [153-Q28050120]Miles Parkes, [155-Q5543353]George Perry, [156-Q30111905]Mauro Piacentini, [157-Q30111759]Ronit Pinkas-Kramarski, [158-Q55207787]Mark J. Prescott, [159-Q28320701]Tassula Proikas-Cezanne, ..., [16-Q84562695]Janice S. Blum, [162-Q28320691]Fulvio Reggiori, [163-Q30111863]Bärbel Rohrer, [164-Q22280152]David C. Rubinsztein, [165-Q37834605]Kevin M Ryan, [166-Q51313947]Junichi Sadoshima, [167-Q63611052]Hiroshi Sakagami, ..., [171-Q89237318]Miklós Sass, [172-Q88513206]Claudio Schneider, [174-Q116996890]Oleksandr Seleverstov, [175-Q87726250]Jeffrey Settleman, [178-Q4418220]Andriy Sibirny, ..., [180-Q37370697]Hans-Uwe Simon, [181-Q56524528]Cristiano Simone, [182-Q41923863]Anne Simonsen, [183-Q6766473]Mark Anthony Smith, [184-Q115606682]Katharina Spanel-Borowski, [187-Q17109045]Harald Stenmark, [188-Q116996876]Per E. Stromhaug, [189-Q17109045]Harald Stenmark, [191-Q5229885]Dave Soldier, [194-Q24266447]Ira Tabas, [195-Q116996891]Fumihiko Takeshita, [196-Q18121255]Nick Talbot, [197-Q125191613]Zsolt Tallóczy, [199-Q54956791]Kozo Tanaka, [2]Hagai Abeliovich, ..., [193-Q58371379]Michele S. Swanson, [2-Q90240639]Hagai Abeliovich, ..., [200-Q56088822]Isei Tanida, [203-Q116996892]Alexei Terman, [204-Q41617710]Gianluca Tettamanti, [205-Q5180710]Craig B. Thompson, [206-Q28321535]Michael Thumm, [207-Q96207073]Aviva M Tolkovsky, ..., [211-Q114404422]Yasuo Uchiyama, [214-Q21552373]Ida Johanna van der Klei, [214-Q21552373-Q21552373]Ida Johanna van der Klei, [215-Q87912007]Eva C Vaquero, [216-Q21552373]Ida Johanna van der Klei, [216-Q21552373-Q21552373]Ida Johanna van der Klei, [219-Q85708745]Paul Webster, [3]Patrizia Agostinis, [4]Devendra K. Agrawal, [5]Gjumrakch Aliev, [6]David S Askew, [7]Misuzu Baba, [8]Eric H Baehrecke, [9]Ben A Bahr, ..., [22-Q30111812]Nadine Camougrand, ..., [221-Q114438979]Gutian Xiao, ..., [226-Q56654210]Tamotsu Yoshimori, ..., [227-Q67426069]Zhenyu Yue, ..., [229-Q116996894]Olga Zabirnyk, ..., [232-Q92560846]Russell Deter, ... [Full author list]Autophagy [curation]DOI: 10.4161/AUTO.5338
PubMed: 18188003		autophagy [curation]; guideline [curation]; laboratory diagnostics [curation]; eukaryotic cell [curation]; statistical data interpretation [curation]2008-02-16
Aup1p, a yeast mitochondrial protein phosphatase homolog, is required for efficient stationary phase mitophagy and cell survival[1]Ruth Tal, [2]Gal Winter, [3]Nitai Ecker, [4]Daniel J. Klionsky, [5]Hagai Abeliovich [Full author list]Journal of Biological Chemistry [curation]DOI: 10.1074/JBC.M605940200
PubMed: 17166847		mitochondrion [curation]; Type 2C protein phosphatase PTC6 YCR079W [curation]2007-02-23
Atg27 is required for autophagy-dependent cycling of Atg9[1]Wei-Lien Yen, [2]Julie E Legakis, [3]Usha Nair, [4]Daniel J. Klionsky [Full author list]Molecular Biology of the Cell [curation]DOI: 10.1091/MBC.E06-07-0612
PubMed: 17135291		cell biology [curation]; autophagy [curation]; Atg23p YLR431C [curation]; Autophagy protein ATG11 YPR049C [curation]; Atg27p YJL178C [curation]2007-02-01
Atg22 recycles amino acids to link the degradative and recycling functions of autophagy[1]Zhifen Yang, [2]Ju Huang, [3]Jiefei Geng, [4]Usha Nair, [5]Daniel J. Klionsky [Full author list]Molecular Biology of the Cell [curation]DOI: 10.1091/MBC.E06-06-0479
PubMed: 17021250		cell biology [curation]; autophagy [curation]; Atg22p YCL038C [curation]2006-12-01
Atg9 cycles between mitochondria and the pre-autophagosomal structure in yeasts[1]Fulvio Reggiori, [2]Takahiro Shintani, [3]Usha Nair, [4]Daniel J. Klionsky [Full author list]Autophagy [curation]DOI: 10.4161/AUTO.1.2.1840
PubMed: 16874040		mitochondrion [curation]; phagophore assembly site membrane [curation]; Autophagy protein ATG9 YDL149W [curation]2005-07-11
Atg17 regulates the magnitude of the autophagic response[1]Heesun Cheong, [2]Tomohiro Yorimitsu, [3]Fulvio Reggiori, [4]Julie E Legakis, [5]Chao-Wen Wang, [6]Daniel J. Klionsky [Full author list]Molecular Biology of the Cell [curation]DOI: 10.1091/MBC.E04-10-0894
PubMed: 15901835		cell biology [curation]; autophagy [curation]; Protein kinase regulatory subunit ATG17 YLR423C [curation]; Protein anchor VAC8 YEL013W [curation]2005-07-01
Trs85 is required for macroautophagy, pexophagy and cytoplasm to vacuole targeting in Yarrowia lipolytica and Saccharomyces cerevisiae[1]Taras Y Nazarko, [2]Ju Huang, [3]Jean-Marc Nicaud, [4]Daniel J. Klionsky, [5]Andrei A Sibirny [Full author list]Autophagy [curation]DOI: 10.4161/AUTO.1.1.1512
PubMed: 16874038		vacuole [curation]; Saccharomyces cerevisiae [curation]; Yarrowia lipolytica [curation]; Trs85p YDR108W [curation]2005-04-01
Atg21 is a phosphoinositide binding protein required for efficient lipidation and localization of Atg8 during uptake of aminopeptidase I by selective autophagy[1]Per E Strømhaug, [2]Fulvio Reggiori, [3]Ju Guan, [4]Chao-Wen Wang, [5]Daniel J. Klionsky [Full author list]Molecular Biology of the Cell [curation]DOI: 10.1091/MBC.E04-02-0147
PubMed: 15155809		cell biology [curation]; autophagy [curation]; Phosphoinositide binding protein ATG18 YFR021W [curation]; Hsv2p YGR223C [curation]; Atg21p YPL100W [curation]; Atg5p YPL149W [curation]2004-08-01
The Ras/cAMP-dependent protein kinase signaling pathway regulates an early step of the autophagy process in Saccharomyces cerevisiae[1]Yelena V Budovskaya, [2]Joseph S Stephan, [3]Fulvio Reggiori, [4]Daniel J. Klionsky, [5]Paul K Herman [Full author list]Journal of Biological Chemistry [curation]DOI: 10.1074/JBC.M400272200
PubMed: 15016820		cell biology [curation]; autophagy [curation]; Saccharomyces cerevisiae [curation]; Ras family GTPase RAS2 YNL098C [curation]; CAMP-dependent protein kinase catalytic subunit TPK1 YJL164C [curation]2004-05-14
Yeast homotypic vacuole fusion requires the Ccz1-Mon1 complex during the tethering/docking stage[1]Chao-Wen Wang, [2]Per E Stromhaug, [3]Emily J Kauffman, [4]Lois S Weisman, [5]Daniel J. Klionsky [Full author list]Journal of Cell Biology [curation]DOI: 10.1083/JCB.200308071
PubMed: 14662743		cell biology [curation]; vacuole [curation]; Ccz1p YBR131W [curation]; Mon1p YGL124C [curation]2003-12-08
Atg23 is essential for the cytoplasm to vacuole targeting pathway and efficient autophagy but not pexophagy[1]Katherine A Tucker, [2]Fulvio Reggiori, [3]William A Dunn, [4]Daniel J. Klionsky [Full author list]Journal of Biological Chemistry [curation]DOI: 10.1074/JBC.M309238200
PubMed: 14504273		cell biology [curation]; vacuole [curation]; autophagy [curation]; Atg23p YLR431C [curation]2003-11-28
Vps51 is part of the yeast Vps fifty-three tethering complex essential for retrograde traffic from the early endosome and Cvt vesicle completion[1]Fulvio Reggiori, [2]Chao-Wen Wang, [3]Per E Stromhaug, [4]Takahiro Shintani, [5]Daniel J. Klionsky [Full author list]Journal of Biological Chemistry [curation]DOI: 10.1074/JBC.M210436200
PubMed: 12446664		cell biology [curation]; GARP complex [curation]; Vps51p YKR020W [curation]; Vps52p YDR484W [curation]2003-02-14
The Ccz1-Mon1 protein complex is required for the late step of multiple vacuole delivery pathways[1]Chao-Wen Wang, [2]Per E Stromhaug, [3]Jun Shima, [4]Daniel J. Klionsky [Full author list]Journal of Biological Chemistry [curation]DOI: 10.1074/JBC.M208191200
PubMed: 12364329		cell biology [curation]; vacuole [curation]; Ccz1p YBR131W [curation]; Mon1p YGL124C [curation]2002-12-06
Mechanism of cargo selection in the cytoplasm to vacuole targeting pathway[1]Takahiro Shintani, [2]Wei-Pang Huang, [3]Per E Stromhaug, [4]Daniel J. Klionsky [Full author list]Developmental Cell [curation]DOI: 10.1016/S1534-5807(02)00373-8
PubMed: 12479808		vacuole [curation]; Alpha-mannosidase YGL156W [curation]; Autophagy protein ATG11 YPR049C [curation]; Atg19p YOL082W [curation]2002-12-01
Cooperative binding of the cytoplasm to vacuole targeting pathway proteins, Cvt13 and Cvt20, to phosphatidylinositol 3-phosphate at the pre-autophagosomal structure is required for selective autophagy[1]Daniel C Nice, [2]Trey K Sato, [3]Per E Stromhaug, [4]Scott D Emr, [5]Daniel J. Klionsky [Full author list]Journal of Biological Chemistry [curation]DOI: 10.1074/JBC.M204736200
PubMed: 12048214		cell biology [curation]; vacuole [curation]; autophagy [curation]; protein structure [curation]; phagophore assembly site [curation]; Atg20p YDL113C [curation]; Protein kinase regulatory subunit ATG17 YLR423C [curation]; Snx4p YJL036W [curation]2002-08-16
Autophagy in the eukaryotic cell[1]Fulvio Reggiori, [2]Daniel J. Klionsky [Full author list]Eukaryotic Cell [curation]DOI: 10.1128/EC.01.1.11-21.2002
PubMed: 12455967		autophagy [curation]2002-02-01
Cvt18/Gsa12 is required for cytoplasm-to-vacuole transport, pexophagy, and autophagy in Saccharomyces cerevisiae and Pichia pastoris[1]J Guan, [2]P E Stromhaug, [3]M D George, [4]P Habibzadegah-Tari, [5]A Bevan, [6]W A Dunn, [7]Daniel J. Klionsky [Full author list]Molecular Biology of the Cell [curation]DOI: 10.1091/MBC.12.12.3821
PubMed: 11739783		vacuole [curation]; Pichia pastoris [curation]; autophagy [curation]; Saccharomyces cerevisiae [curation]; Phosphoinositide binding protein ATG18 YFR021W [curation]2001-12-01
Apg2 is a novel protein required for the cytoplasm to vacuole targeting, autophagy, and pexophagy pathways[1]C W Wang, [2]J Kim, [3]W P Huang, [4]H Abeliovich, [5]P E Stromhaug, [6]W A Dunn, [7]Daniel J. Klionsky [Full author list]Journal of Biological Chemistry [curation]DOI: 10.1074/JBC.M102342200
PubMed: 11382760		cell biology [curation]; vacuole [curation]; autophagy [curation]; peroxisomal membrane disassembly [curation]; Atg2p YNL242W [curation]2001-08-10
Cvt19 is a receptor for the cytoplasm-to-vacuole targeting pathway.[1]S V Scott, [2]J Guan, [3]M U Hutchins, [4]J Kim, [5]Daniel J. Klionsky [Full author list]Molecular Cell [curation]DOI: 10.1016/S1097-2765(01)00263-5
PubMed: 11430817		vacuole [curation]; Atg19p YOL082W [curation]2001-06-01
Cvt9/Gsa9 functions in sequestering selective cytosolic cargo destined for the vacuole[1]J Kim, [2]Yoshiaki Kamada, [3]P E Stromhaug, [4]J Guan, [5]A Hefner-Gravink, [6]M Baba, [7]S V Scott, [8]Ōsumi Yoshinori, [9]W A Dunn, [10]Daniel J. Klionsky [Full author list]Journal of Cell Biology [curation]DOI: 10.1083/JCB.153.2.381
PubMed: 11309418		vacuole [curation]; Autophagy protein ATG11 YPR049C [curation]; Serine/threonine protein kinase ATG1 YGL180W [curation]2001-04-16
Degradation of lipid vesicles in the yeast vacuole requires function of Cvt17, a putative lipase[1]S A Teter, [2]K P Eggerton, [3]S V Scott, [4]J Kim, [5]A M Fischer, [6]Daniel J. Klionsky [Full author list]Journal of Biological Chemistry [curation]DOI: 10.1074/JBC.C000739200
PubMed: 11085977		cell biology [curation]; vacuole [curation]; Cvt vesicle assembly [curation]; Triglyceride lipase ATG15 YCR068W [curation]2001-01-19
Membrane recruitment of Aut7p in the autophagy and cytoplasm to vacuole targeting pathways requires Aut1p, Aut2p, and the autophagy conjugation complex[1]J Kim, [2]W P Huang, [3]Daniel J. Klionsky [Full author list]Journal of Cell Biology [curation]DOI: 10.1083/JCB.152.1.51
PubMed: 11149920		vacuole [curation]; autophagy [curation]; Ubiquitin-like protein ATG8 YBL078C [curation]; Atg3p YNR007C [curation]; Cysteine protease ATG4 YNL223W [curation]2001-01-08
Apg5p functions in the sequestration step in the cytoplasm-to-vacuole targeting and macroautophagy pathways[1]M D George, [2]M Baba, [3]S V Scott, [4]N Mizushima, [5]B S Garrison, [6]Ōsumi Yoshinori, [7]Daniel J. Klionsky [Full author list]Molecular Biology of the Cell [curation]DOI: 10.1091/MBC.11.3.969
PubMed: 10712513		vacuole [curation]; Atg5p YPL149W [curation]2000-03-01
Apg9p/Cvt7p is an integral membrane protein required for transport vesicle formation in the Cvt and autophagy pathways[1]Takeshi Noda, [2]J Kim, [3]W P Huang, [4]M Baba, [5]C Tokunaga, [6]Ōsumi Yoshinori, [7]Daniel J. Klionsky [Full author list]Journal of Cell Biology [curation]DOI: 10.1083/JCB.148.3.465
PubMed: 10662773		autophagy [curation]; membrane protein [curation]; Autophagy protein ATG9 YDL149W [curation]2000-02-07
Cytoplasm-to-vacuole targeting and autophagy employ the same machinery to deliver proteins to the yeast vacuole[1]S V Scott, [2]A Hefner-Gravink, [3]K A Morano, [4]Takeshi Noda, [5]Ōsumi Yoshinori, [6]Daniel J. Klionsky [Full author list]Proceedings of the National Academy of Sciences of the United States of America [curation]DOI: 10.1073/PNAS.93.22.12304
PubMed: 8901576		vacuole [curation]; autophagy [curation]; Atg14p YBR128C [curation]1996-10-29
Multiple classes of yeast mutants are defective in vacuole partitioning yet target vacuole proteins correctly[1]Y X Wang, [2]H Zhao, [3]T M Harding, [4]D S Gomes de Mesquita, [5]C L Woldringh, [6]Daniel J. Klionsky, [7]A L Munn, [8]L S Weisman [Full author list]Molecular Biology of the Cell [curation]DOI: 10.1091/MBC.7.9.1375
PubMed: 8885233		vacuole [curation]; Protein anchor VAC8 YEL013W [curation]1996-09-01
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